Variant report

Variant	rs62009835
Chromosome Location	chr15:49592321-49592322
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49591113..49594727-chr15:49595411..49597840,3	K562	blood:
2	chr15:49590980..49593614-chr15:49622118..49624622,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11853754	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62012190	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
2	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:49557800-49607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
6	chr15:49558200-49611800	Weak transcription	Colonic Mucosa	Colon
7	chr15:49561000-49600800	Weak transcription	Pancreas	Pancrea
8	chr15:49562000-49595800	Weak transcription	HepG2	liver
9	chr15:49562200-49626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:49563600-49611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:49564000-49593600	Weak transcription	HMEC	breast
12	chr15:49564200-49593600	Weak transcription	Lung	lung
13	chr15:49565400-49602000	Weak transcription	Fetal Heart	heart
14	chr15:49566200-49611800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:49566400-49595600	Weak transcription	Gastric	stomach
16	chr15:49566600-49623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr15:49572000-49595800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:49572800-49600800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:49573600-49613000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:49573800-49622200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:49576400-49593600	Weak transcription	Stomach Mucosa	stomach
22	chr15:49576600-49605600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:49576800-49611800	Weak transcription	Thymus	Thymus
24	chr15:49577000-49605800	Weak transcription	A549	lung
25	chr15:49577200-49607000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:49577600-49605400	Weak transcription	Fetal Intestine Small	intestine
27	chr15:49577800-49596600	Weak transcription	HSMM	muscle
28	chr15:49577800-49611600	Weak transcription	Fetal Brain Female	brain
29	chr15:49578000-49596400	Weak transcription	Placenta	Placenta
30	chr15:49578200-49593600	Weak transcription	Osteobl	bone
31	chr15:49578200-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:49578200-49604400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:49578200-49611000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:49578400-49605400	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:49578400-49611200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:49579400-49612000	Weak transcription	HUVEC	blood vessel
37	chr15:49580600-49615600	Weak transcription	Fetal Brain Male	brain
38	chr15:49580800-49605600	Weak transcription	NHEK	skin
39	chr15:49581200-49607400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:49581400-49607600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:49582200-49611400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:49582600-49628200	Weak transcription	Spleen	Spleen
43	chr15:49582800-49595600	Weak transcription	Aorta	Aorta
44	chr15:49583000-49606800	Weak transcription	Fetal Stomach	stomach
45	chr15:49583200-49595600	Weak transcription	Ovary	ovary
46	chr15:49583200-49600800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:49583200-49611400	Weak transcription	Small Intestine	intestine
48	chr15:49583400-49600800	Weak transcription	HSMMtube	muscle
49	chr15:49583800-49595600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:49584000-49605800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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