Variant report

Variant	rs62010205
Chromosome Location	chr15:83777375-83777376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83772736..83774593-chr15:83776536..83778048,2	K562	blood:
2	chr15:83734097..83737104-chr15:83774428..83777906,3	MCF-7	breast:
3	chr15:83679523..83682277-chr15:83776010..83777597,2	K562	blood:
4	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
5	chr15:83772990..83774808-chr15:83777326..83779518,2	MCF-7	breast:
6	chr15:83777307..83779024-chr15:83779702..83782289,2	K562	blood:

Variant related genes	Relation type
ENSG00000263643	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62010249	0.81[EUR][1000 genomes]
rs62010253	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3392859	chr15:83775373-83777921	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83775600-83777400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr15:83775600-83778000	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr15:83775600-83778000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:83775800-83777400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:83775800-83777600	Active TSS	HSMMtube	muscle
6	chr15:83775800-83777800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
7	chr15:83775800-83777800	Flanking Active TSS	Dnd41	blood
8	chr15:83775800-83778200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr15:83776000-83777400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:83776000-83777600	Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr15:83776400-83777400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:83776400-83777400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:83776400-83777800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
14	chr15:83776600-83777400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
15	chr15:83776600-83777400	Enhancers	Pancreas	Pancrea
16	chr15:83776600-83777400	Flanking Active TSS	Right Ventricle	heart
17	chr15:83776600-83777600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
18	chr15:83776600-83777800	Enhancers	Fetal Heart	heart
19	chr15:83776600-83777800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
20	chr15:83776600-83777800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
21	chr15:83776600-83777800	Flanking Active TSS	GM12878-XiMat	blood
22	chr15:83776600-83778000	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr15:83776600-83778000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr15:83776800-83777400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr15:83776800-83777400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:83776800-83777400	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr15:83776800-83777400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
28	chr15:83776800-83777400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:83776800-83777400	Bivalent Enhancer	HMEC	breast
30	chr15:83776800-83777400	Flanking Active TSS	K562	blood
31	chr15:83776800-83777600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:83776800-83777800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:83776800-83777800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
34	chr15:83776800-83777800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:83776800-83778000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr15:83776800-83778200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr15:83776800-83781800	Weak transcription	Gastric	stomach
38	chr15:83777000-83777400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr15:83777000-83777400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:83777000-83777400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
41	chr15:83777000-83777400	Flanking Bivalent TSS/Enh	Placenta	Placenta
42	chr15:83777000-83777400	Active TSS	Left Ventricle	heart
43	chr15:83777000-83777400	Flanking Active TSS	Lung	lung
44	chr15:83777000-83777400	Flanking Active TSS	Psoas Muscle	Psoas
45	chr15:83777000-83777400	Flanking Active TSS	Right Atrium	heart
46	chr15:83777000-83777400	Bivalent/Poised TSS	NHEK	skin
47	chr15:83777000-83777400	Bivalent Enhancer	Osteobl	bone
48	chr15:83777000-83777600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
49	chr15:83777000-83777600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
50	chr15:83777000-83777600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links