Variant report

Variant	rs62010542
Chromosome Location	chr15:33932421-33932422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33904850..33906861-chr15:33932211..33933758,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16972044	1.00[AFR][1000 genomes]
rs17817434	0.85[AMR][1000 genomes]
rs41279204	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62010497	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:33922200-33938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:33924400-33936400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:33925800-33952600	Weak transcription	Brain Anterior Caudate	brain
6	chr15:33928800-33936400	Weak transcription	Aorta	Aorta
7	chr15:33930400-33932600	Enhancers	Primary B cells from peripheral blood	blood
8	chr15:33931000-33947000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:33931200-33936600	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:33931200-33951400	Weak transcription	Spleen	Spleen
11	chr15:33931400-33934600	Strong transcription	Stomach Smooth Muscle	stomach
12	chr15:33931600-33932800	Enhancers	Fetal Brain Male	brain
13	chr15:33931600-33933000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:33931600-33933400	Enhancers	Primary hematopoietic stem cells	blood
15	chr15:33931600-33933600	Enhancers	Brain Germinal Matrix	brain
16	chr15:33932000-33932600	Enhancers	Brain Substantia Nigra	brain
17	chr15:33932000-33932600	Enhancers	Fetal Brain Female	brain
18	chr15:33932000-33932800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:33932200-33932800	Enhancers	Brain Hippocampus Middle	brain
20	chr15:33932200-33933200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:33932200-33938600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:33932400-33932600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:33932400-33933000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:33932400-33934400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:33932400-33938800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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