Variant report

Variant	rs62016796
Chromosome Location	chr15:73346583-73346584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13379875	0.87[EUR][1000 genomes]
rs1964543	0.87[AMR][1000 genomes]
rs4132536	0.84[EUR][1000 genomes]
rs4609810	0.82[EUR][1000 genomes]
rs55916847	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62016793	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62016795	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62016803	0.81[EUR][1000 genomes]
rs62016805	0.84[EUR][1000 genomes]
rs62016808	0.86[AMR][1000 genomes]
rs62016813	0.85[AMR][1000 genomes]
rs7165610	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3438792	chr15:73343424-73346772	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73343200-73346600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr15:73343200-73347600	Active TSS	Colonic Mucosa	Colon
3	chr15:73343400-73346600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:73343400-73346800	Active TSS	Aorta	Aorta
5	chr15:73343600-73346600	Active TSS	Brain Substantia Nigra	brain
6	chr15:73343600-73346600	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr15:73343600-73346600	Active TSS	Fetal Intestine Large	intestine
8	chr15:73343600-73346800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr15:73343600-73346800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr15:73343600-73347000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:73343600-73347400	Active TSS	Fetal Intestine Small	intestine
12	chr15:73343800-73346600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:73343800-73346600	Active TSS	Brain Cingulate Gyrus	brain
14	chr15:73343800-73346600	Active TSS	Fetal Stomach	stomach
15	chr15:73345400-73346600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr15:73345400-73346800	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr15:73345800-73346600	Flanking Active TSS	Colon Smooth Muscle	Colon
18	chr15:73345800-73346800	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr15:73345800-73348000	Weak transcription	Small Intestine	intestine
20	chr15:73346000-73346600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr15:73346000-73346600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:73346000-73346600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
23	chr15:73346000-73346600	Flanking Active TSS	Fetal Lung	lung
24	chr15:73346000-73347000	Weak transcription	Pancreas	Pancrea
25	chr15:73346000-73347200	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr15:73346000-73347200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr15:73346000-73347800	Flanking Active TSS	Fetal Brain Female	brain
28	chr15:73346200-73346600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:73346200-73346600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr15:73346200-73346600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:73346200-73346600	Flanking Active TSS	Brain Angular Gyrus	brain
32	chr15:73346200-73346600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr15:73346200-73346600	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr15:73346200-73346600	Bivalent Enhancer	Dnd41	blood
35	chr15:73346200-73347000	Weak transcription	Psoas Muscle	Psoas
36	chr15:73346200-73347200	Enhancers	Liver	Liver
37	chr15:73346200-73348200	Enhancers	Stomach Mucosa	stomach
38	chr15:73346200-73348800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:73346400-73346600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
40	chr15:73346400-73346600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:73346400-73346600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
42	chr15:73346400-73346800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:73346400-73346800	Active TSS	Fetal Brain Male	brain
44	chr15:73346400-73346800	Active TSS	Fetal Kidney	kidney
45	chr15:73346400-73346800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr15:73346400-73347000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:73346400-73347000	Enhancers	Fetal Heart	heart
48	chr15:73346400-73347200	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr15:73346400-73347600	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr15:73346400-73347600	Enhancers	Skeletal Muscle Male	skeletal muscle

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