Variant report

Variant	rs62020298
Chromosome Location	chr15:93107984-93107985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11631425	0.81[AMR][1000 genomes]
rs17522973	0.81[AMR][1000 genomes]
rs1826852	0.84[AMR][1000 genomes]
rs35424208	0.87[AMR][1000 genomes]
rs4453423	0.84[AMR][1000 genomes]
rs62020296	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62020297	0.93[ASN][1000 genomes]
rs62020300	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93104000-93108200	Enhancers	Fetal Lung	lung
2	chr15:93106000-93125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:93106200-93108200	Enhancers	HUVEC	blood vessel
4	chr15:93106400-93108200	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:93106600-93108000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:93106600-93108000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:93106600-93108000	Enhancers	Fetal Stomach	stomach
8	chr15:93106600-93108200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:93106600-93113200	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:93107000-93113200	Weak transcription	Left Ventricle	heart
11	chr15:93107400-93108000	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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