Variant report

Variant	rs62022576
Chromosome Location	chr15:93187056-93187057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr15:93186870-93187428	GM12878	blood:	n/a	n/a
2	BCLAF1	chr15:93186934-93187618	GM12878	blood:	n/a	chr15:93187127-93187136
3	ATF2	chr15:93186928-93187593	GM12878	blood:	n/a	n/a
4	BATF	chr15:93186847-93187098	GM12878	blood:	n/a	chr15:93186960-93186971
5	POLR2A	chr15:93187021-93187406	GM12891	blood:	n/a	n/a
6	POLR2A	chr15:93187050-93187739	GM12878	blood:	n/a	n/a
7	POLR2A	chr15:93187034-93187305	GM12891	blood:	n/a	n/a
8	EP300	chr15:93186977-93189365	MCF-7	breast:	n/a	chr15:93188697-93188711 chr15:93187355-93187364
9	SIN3AK20	chr15:93186851-93189903	MCF-7	breast:	n/a	n/a
10	POLR2A	chr15:93187019-93187441	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:93064927..93066555-chr15:93186642..93188513,2	MCF-7	breast:
2	chr15:93080164..93082598-chr15:93185700..93188569,2	MCF-7	breast:
3	chr15:92925743..92927668-chr15:93187045..93188593,2	MCF-7	breast:
4	chr15:93017434..93020038-chr15:93186293..93188824,2	MCF-7	breast:

Variant related genes	Relation type
FAM174B	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11630591	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285770	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3743360	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58898424	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61165177	0.96[EUR][1000 genomes]
rs62022578	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62022580	1.00[EUR][1000 genomes]
rs62022581	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93178000-93188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:93178800-93187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:93180200-93187200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:93181200-93187800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:93182000-93197800	Weak transcription	Small Intestine	intestine
7	chr15:93182200-93187400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:93182400-93187400	Weak transcription	Right Atrium	heart
9	chr15:93182400-93188400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:93182400-93188400	Weak transcription	Fetal Lung	lung
11	chr15:93182400-93190600	Weak transcription	Psoas Muscle	Psoas
12	chr15:93182400-93191200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:93182600-93187200	Weak transcription	Esophagus	oesophagus
14	chr15:93182600-93187400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:93182600-93187400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:93182600-93187600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:93182600-93197200	Weak transcription	Fetal Kidney	kidney
18	chr15:93183000-93188200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:93183200-93187400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:93183600-93187400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:93186000-93188400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:93186000-93190600	Weak transcription	Fetal Intestine Small	intestine
24	chr15:93186200-93188200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:93186400-93189400	Enhancers	Placenta	Placenta
26	chr15:93186400-93194200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:93186600-93187200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:93186800-93187400	Enhancers	Primary hematopoietic stem cells	blood
29	chr15:93186800-93188400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:93186800-93189400	Enhancers	Gastric	stomach
31	chr15:93186800-93190000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:93186800-93191400	Enhancers	Stomach Mucosa	stomach
33	chr15:93186800-93192800	Enhancers	HUVEC	blood vessel
34	chr15:93187000-93187600	Genic enhancers	Pancreas	Pancrea
35	chr15:93187000-93187800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr15:93187000-93187800	Flanking Active TSS	GM12878-XiMat	blood
37	chr15:93187000-93188000	Enhancers	Lung	lung
38	chr15:93187000-93189000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:93187000-93189600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:93187000-93190200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr15:93187000-93190400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr15:93187000-93190600	Enhancers	HUES6 Cell Line	embryonic stem cell

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