Variant report

Variant	rs62025382
Chromosome Location	chr15:99923569-99923570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1510059	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2289558	0.95[ASN][1000 genomes]
rs28651946	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28729666	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4471659	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4545797	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58762669	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59136665	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59855164	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62023846	0.81[EUR][1000 genomes]
rs62023847	0.81[EUR][1000 genomes]
rs62023852	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023854	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023857	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62023858	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62025360	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62025361	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62025363	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62025364	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62025365	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62025366	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62025367	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62025383	0.97[ASN][1000 genomes]
rs7181876	0.80[EUR][1000 genomes]
rs7181973	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs768159	0.97[ASN][1000 genomes]
rs8041236	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs978703	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
8	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
9	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
11	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
13	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv1052683	chr15:99869631-99924685	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv542521	chr15:99869631-99924685	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99867200-99926600	Weak transcription	NHEK	skin
2	chr15:99882600-99925200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:99886600-99931400	Weak transcription	Esophagus	oesophagus
4	chr15:99893600-99925400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:99894000-99925200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:99902000-99925600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:99903600-99924800	Weak transcription	Left Ventricle	heart
8	chr15:99903600-99925200	Weak transcription	Lung	lung
9	chr15:99903600-99926600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:99905000-99928200	Weak transcription	Pancreas	Pancrea
11	chr15:99907000-99925400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:99907200-99926600	Weak transcription	Fetal Kidney	kidney
13	chr15:99907400-99924800	Weak transcription	A549	lung
14	chr15:99907400-99926200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:99907400-99928200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:99907800-99925400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:99908200-99924800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:99908200-99925400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr15:99908800-99924000	Weak transcription	Fetal Stomach	stomach
20	chr15:99909600-99925200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:99909800-99924800	Weak transcription	Fetal Intestine Small	intestine
22	chr15:99909800-99926200	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:99910400-99934400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:99912600-99925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:99913400-99924800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:99915000-99924800	Weak transcription	Liver	Liver
27	chr15:99915200-99947400	Weak transcription	Thymus	Thymus
28	chr15:99916600-99924200	Weak transcription	Dnd41	blood
29	chr15:99916800-99924200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:99916800-99925200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:99916800-99931200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:99917000-99923600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr15:99920800-99924400	Weak transcription	Small Intestine	intestine
34	chr15:99921000-99924800	Weak transcription	Primary T cells from cord blood	blood
35	chr15:99922600-99924800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:99922600-99925400	Weak transcription	NHLF	lung
37	chr15:99922800-99923600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:99923000-99924600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:99923000-99926200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:99923000-99927600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:99923000-99928400	Weak transcription	Brain Angular Gyrus	brain
42	chr15:99923200-99924000	Strong transcription	Fetal Intestine Large	intestine
43	chr15:99923200-99924600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:99923200-99925400	Strong transcription	Primary B cells from cord blood	blood
45	chr15:99923200-99930800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:99923400-99925200	Strong transcription	Fetal Thymus	thymus
47	chr15:99923400-99927000	Weak transcription	Aorta	Aorta
48	chr15:99923400-99928600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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