Variant report

Variant	rs62035202
Chromosome Location	chr16:82899101-82899102
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12149059	0.90[ASN][1000 genomes]
rs17674039	0.90[ASN][1000 genomes]
rs17674111	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17740866	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57881470	0.90[ASN][1000 genomes]
rs59506198	0.90[ASN][1000 genomes]
rs59831726	0.90[ASN][1000 genomes]
rs60930916	0.90[ASN][1000 genomes]
rs61646172	0.90[ASN][1000 genomes]
rs62035246	0.90[ASN][1000 genomes]
rs7192135	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82879200-82907000	Weak transcription	Left Ventricle	heart
2	chr16:82886200-82917000	Weak transcription	Right Ventricle	heart
3	chr16:82889800-82900400	Weak transcription	NHDF-Ad	bronchial
4	chr16:82891000-82907000	Weak transcription	Psoas Muscle	Psoas
5	chr16:82891600-82907800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr16:82897800-82899800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:82897800-82905200	Weak transcription	HSMM	muscle
8	chr16:82898400-82899400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:82898400-82899800	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr16:82898400-82904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:82898600-82899400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:82898800-82899200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:82898800-82899400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:82898800-82899400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:82898800-82901000	Weak transcription	Small Intestine	intestine
16	chr16:82899000-82899400	ZNF genes & repeats	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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