Variant report

Variant	rs62037869
Chromosome Location	chr15:31528253-31528254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17228227	0.85[AMR][1000 genomes]
rs2009358	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2061210	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2061211	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289126	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2304507	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28379600	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28392854	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28469347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28529812	0.85[AMR][1000 genomes]
rs28542528	0.85[AMR][1000 genomes]
rs28605389	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28690880	0.85[AMR][1000 genomes]
rs28718174	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28826082	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4329885	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62037871	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62037874	0.85[AMR][1000 genomes]
rs7342654	0.85[AMR][1000 genomes]
rs754612	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8041227	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31518400-31540600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:31520800-31533600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:31521400-31528600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:31523000-31529600	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:31524200-31528600	Weak transcription	Thymus	Thymus
6	chr15:31524200-31533400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:31524600-31528400	Enhancers	Fetal Heart	heart
8	chr15:31525200-31532000	Enhancers	Fetal Thymus	thymus
9	chr15:31525400-31529800	Enhancers	Right Ventricle	heart
10	chr15:31525800-31530600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:31526400-31529800	Enhancers	Left Ventricle	heart
12	chr15:31526800-31529000	Enhancers	Primary B cells from cord blood	blood
13	chr15:31527000-31532200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:31527200-31529800	Enhancers	Fetal Intestine Small	intestine
15	chr15:31527400-31529600	Enhancers	Fetal Muscle Trunk	muscle
16	chr15:31527400-31529800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:31527400-31532200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr15:31527600-31528400	Enhancers	Stomach Smooth Muscle	stomach
19	chr15:31527600-31528600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:31527600-31528800	Enhancers	Adipose Nuclei	Adipose
21	chr15:31527600-31529600	Enhancers	Duodenum Mucosa	Duodenum
22	chr15:31527600-31529800	Enhancers	Rectal Smooth Muscle	rectum
23	chr15:31527600-31530000	Enhancers	Fetal Stomach	stomach
24	chr15:31527800-31528400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:31527800-31528400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:31527800-31528400	Enhancers	Fetal Brain Female	brain
27	chr15:31527800-31528600	Enhancers	Brain Anterior Caudate	brain
28	chr15:31527800-31528600	Enhancers	Brain Hippocampus Middle	brain
29	chr15:31527800-31528600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr15:31527800-31528600	Enhancers	Hela-S3	cervix
31	chr15:31527800-31528600	Enhancers	NHLF	lung
32	chr15:31527800-31528800	Enhancers	Spleen	Spleen
33	chr15:31527800-31529000	Enhancers	Colon Smooth Muscle	Colon
34	chr15:31527800-31529200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:31527800-31529400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr15:31527800-31529400	Enhancers	Fetal Brain Male	brain
37	chr15:31527800-31529600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:31527800-31529600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr15:31527800-31529600	Enhancers	Brain Angular Gyrus	brain
40	chr15:31527800-31529600	Enhancers	Fetal Lung	lung
41	chr15:31527800-31529600	Enhancers	Lung	lung
42	chr15:31527800-31529600	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr15:31527800-31529600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr15:31527800-31529600	Enhancers	Stomach Mucosa	stomach
45	chr15:31527800-31529600	Enhancers	HSMMtube	muscle
46	chr15:31527800-31529800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:31527800-31529800	Enhancers	Fetal Intestine Large	intestine
48	chr15:31527800-31529800	Enhancers	Fetal Muscle Leg	muscle
49	chr15:31527800-31529800	Enhancers	Right Atrium	heart
50	chr15:31527800-31529800	Enhancers	Small Intestine	intestine

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