Variant report

Variant	rs62039979
Chromosome Location	chr16:82466119-82466120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12921127	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12922638	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12922648	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12923902	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12924445	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12924458	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12924595	1.00[EUR][1000 genomes]
rs12930764	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12935120	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1424054	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16957334	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62039976	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82462200-82466200	Weak transcription	Aorta	Aorta
2	chr16:82465600-82466400	Active TSS	Brain Cingulate Gyrus	brain
3	chr16:82465600-82466400	Active TSS	Brain Hippocampus Middle	brain
4	chr16:82465600-82466400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr16:82465800-82466200	Bivalent/Poised TSS	HSMMtube	muscle
6	chr16:82465800-82466400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr16:82465800-82466400	Active TSS	Brain Substantia Nigra	brain
8	chr16:82465800-82466400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr16:82466000-82466400	Active TSS	Brain Angular Gyrus	brain
10	chr16:82466000-82466400	Active TSS	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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