Variant report

Variant	rs62041313
Chromosome Location	chr16:79790114-79790115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17690030	0.83[EUR][1000 genomes]
rs28414130	0.83[EUR][1000 genomes]
rs28687312	0.83[EUR][1000 genomes]
rs4458007	0.83[EUR][1000 genomes]
rs55981441	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55993612	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56006814	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56052219	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56119147	0.83[EUR][1000 genomes]
rs62041260	0.83[EUR][1000 genomes]
rs62041303	0.83[EUR][1000 genomes]
rs62041304	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62041307	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62041308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62041312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62041317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62041318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62041319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62041320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62041323	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62041324	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041325	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041326	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62041327	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041339	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041344	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62041345	0.85[EUR][1000 genomes]
rs62041346	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62041347	0.83[EUR][1000 genomes]
rs62041348	0.85[EUR][1000 genomes]
rs62041349	0.85[EUR][1000 genomes]
rs62043346	0.83[EUR][1000 genomes]
rs62043347	0.83[EUR][1000 genomes]
rs62043348	0.83[EUR][1000 genomes]
rs62043349	0.83[EUR][1000 genomes]
rs62043352	0.83[EUR][1000 genomes]
rs62043353	0.83[EUR][1000 genomes]
rs62043354	0.83[EUR][1000 genomes]
rs62043355	0.83[EUR][1000 genomes]
rs62043356	0.83[EUR][1000 genomes]
rs62043357	0.83[EUR][1000 genomes]
rs62043359	0.83[EUR][1000 genomes]
rs7187139	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8053535	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2755409	chr16:79776699-79816299	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv827771	chr16:79789259-79790702	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79786200-79791800	Weak transcription	Esophagus	oesophagus
2	chr16:79787000-79792200	Weak transcription	NHLF	lung
3	chr16:79787400-79792400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr16:79787800-79792600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:79788600-79790600	Weak transcription	NHDF-Ad	bronchial
6	chr16:79789000-79792400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:79789000-79794000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:79789200-79790200	Weak transcription	Fetal Intestine Large	intestine
9	chr16:79789200-79790400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr16:79789200-79791000	Weak transcription	Fetal Thymus	thymus
11	chr16:79789200-79791200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:79789200-79791400	Weak transcription	Fetal Intestine Small	intestine
13	chr16:79789200-79792000	Weak transcription	HMEC	breast
14	chr16:79789200-79792400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr16:79789200-79792400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:79789200-79792400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr16:79789200-79792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:79789200-79792600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:79789200-79792600	Weak transcription	Fetal Lung	lung
20	chr16:79789200-79801400	Weak transcription	Fetal Muscle Leg	muscle
21	chr16:79789200-79802000	Weak transcription	Primary T cells from cord blood	blood
22	chr16:79789400-79790400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr16:79789400-79790800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr16:79789400-79791400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr16:79789400-79792200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr16:79789400-79792200	Weak transcription	NHEK	skin
27	chr16:79789400-79801400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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