Variant report

Variant	rs62043903
Chromosome Location	chr16:81459664-81459665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17197603	1.00[AFR][1000 genomes]
rs62043898	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62043899	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81453000-81462800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:81455600-81465400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:81458800-81462400	Weak transcription	HepG2	liver
4	chr16:81458800-81462600	Weak transcription	Fetal Thymus	thymus
5	chr16:81458800-81462800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr16:81458800-81465400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr16:81459000-81462800	Weak transcription	Dnd41	blood
8	chr16:81459200-81462400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr16:81459200-81462600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr16:81459200-81462600	Weak transcription	A549	lung
11	chr16:81459200-81462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr16:81459200-81465200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:81459400-81462800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr16:81459400-81465200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr16:81459400-81465600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr16:81459600-81462600	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links