Variant report

Variant	rs62044097
Chromosome Location	chr15:56412060-56412061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2682050	0.89[EUR][1000 genomes]
rs2725871	0.90[EUR][1000 genomes]
rs34361729	0.95[EUR][1000 genomes]
rs56306844	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56414400	Weak transcription	Thymus	Thymus
2	chr15:56388800-56418400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:56388800-56433000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
5	chr15:56388800-56441600	Weak transcription	Lung	lung
6	chr15:56389400-56418400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:56389400-56418400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:56389600-56414400	Weak transcription	HSMMtube	muscle
9	chr15:56389800-56415600	Weak transcription	Placenta	Placenta
10	chr15:56390400-56414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:56390600-56412600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:56390600-56413200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:56390600-56414200	Weak transcription	Fetal Lung	lung
14	chr15:56390600-56414200	Weak transcription	Left Ventricle	heart
15	chr15:56390600-56414600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:56390600-56416400	Weak transcription	HUVEC	blood vessel
17	chr15:56390600-56417400	Weak transcription	Adipose Nuclei	Adipose
18	chr15:56390600-56418000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:56390800-56418600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:56391800-56415800	Weak transcription	Ovary	ovary
21	chr15:56392600-56417200	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:56393800-56412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:56394000-56414200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:56394000-56418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:56394200-56417000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:56394400-56414000	Weak transcription	HMEC	breast
27	chr15:56394400-56414200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:56394400-56414200	Weak transcription	NH-A	brain
29	chr15:56394800-56414800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:56395000-56412600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr15:56395000-56415800	Weak transcription	Fetal Thymus	thymus
32	chr15:56395000-56418200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:56395200-56414200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:56396000-56412600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:56397000-56414200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:56397200-56414200	Weak transcription	Primary T cells from cord blood	blood
37	chr15:56397400-56412400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr15:56397400-56412600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr15:56398400-56413200	Weak transcription	Dnd41	blood
40	chr15:56399200-56412800	Weak transcription	HepG2	liver
41	chr15:56405400-56414200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:56405800-56414800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:56407600-56414200	Weak transcription	HSMM	muscle
44	chr15:56407800-56414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:56408000-56418200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:56408400-56414400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:56408600-56412600	Weak transcription	Primary B cells from cord blood	blood
48	chr15:56408600-56414200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:56409000-56412400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:56409200-56412600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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