Variant report
| Variant | rs620464 |
|---|---|
| Chromosome Location | chr3:109572111-109572112 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1164205 | 0.85[ASN][1000 genomes] |
| rs1164206 | 0.85[ASN][1000 genomes] |
| rs581999 | 0.82[ASN][1000 genomes] |
| rs582946 | 0.82[ASN][1000 genomes] |
| rs586783 | 0.90[ASN][1000 genomes] |
| rs591350 | 0.91[ASN][1000 genomes] |
| rs601561 | 0.91[ASN][1000 genomes] |
| rs603474 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs605795 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs607450 | 0.82[ASN][1000 genomes] |
| rs619279 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs638718 | 0.82[ASN][1000 genomes] |
| rs640194 | 0.87[ASN][1000 genomes] |
| rs652762 | 0.90[CHB][hapmap];0.93[JPT][hapmap] |
| rs652972 | 0.87[ASN][1000 genomes] |
| rs653349 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs655376 | 0.82[ASN][1000 genomes] |
| rs656615 | 0.95[CHB][hapmap];0.94[JPT][hapmap] |
| rs656888 | 0.85[ASN][1000 genomes] |
| rs662417 | 0.91[ASN][1000 genomes] |
| rs679711 | 0.90[ASN][1000 genomes] |
| rs686694 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs687239 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs687619 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs776343 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009075 | chr3:109462019-109800029 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv591270 | chr3:109462400-109793785 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011265 | chr3:109474218-109625143 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109570800-109572400 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
| 2 | chr3:109571000-109572400 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
