Variant report

Variant	rs62046768
Chromosome Location	chr16:82263443-82263444
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:82211064..82211822-chr16:82263223..82264188,4	MCF-7	breast:
2	chr16:82065223..82067133-chr16:82262887..82264649,2	MCF-7	breast:
3	chr16:81974180..81974994-chr16:82263377..82264081,3	MCF-7	breast:
4	chr16:82064738..82065659-chr16:82263372..82264240,11	MCF-7	breast:
5	chr16:82049544..82050394-chr16:82263299..82263885,2	MCF-7	breast:
6	chr16:81973203..81974111-chr16:82263361..82264340,4	K562	blood:
7	chr16:82255757..82258661-chr16:82260604..82263594,2	K562	blood:
8	chr16:81923911..81924649-chr16:82263311..82264070,2	K562	blood:
9	chr16:82135638..82136440-chr16:82263371..82264096,2	MCF-7	breast:
10	chr16:82064722..82065718-chr16:82262987..82264266,17	MCF-7	breast:

No data

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11861148	1.00[ASN][1000 genomes]
rs16956763	1.00[ASN][1000 genomes]
rs16956800	1.00[ASN][1000 genomes]
rs16956911	1.00[ASN][1000 genomes]
rs16956915	1.00[ASN][1000 genomes]
rs2967389	1.00[ASN][1000 genomes]
rs2967392	1.00[ASN][1000 genomes]
rs57199827	1.00[EUR][1000 genomes]
rs60409444	1.00[ASN][1000 genomes]
rs62038276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62038282	1.00[EUR][1000 genomes]
rs62046763	1.00[EUR][1000 genomes]
rs62046764	1.00[EUR][1000 genomes]
rs62046765	1.00[EUR][1000 genomes]
rs62046766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62046769	1.00[EUR][1000 genomes]
rs62047185	0.88[EUR][1000 genomes]
rs7185760	1.00[EUR][1000 genomes]
rs73593287	1.00[ASN][1000 genomes]
rs73595022	1.00[ASN][1000 genomes]
rs748638	1.00[ASN][1000 genomes]
rs748639	1.00[ASN][1000 genomes]
rs8045460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907015	chr16:82203758-82284056	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
10	nsv907016	chr16:82235303-82280548	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv522270	chr16:82252003-82325530	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3426086	chr16:82258403-82263911	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82263200-82264200	Enhancers	Stomach Mucosa	stomach
2	chr16:82263400-82263800	Enhancers	Duodenum Mucosa	Duodenum
3	chr16:82263400-82263800	Enhancers	Fetal Intestine Small	intestine
4	chr16:82263400-82263800	Enhancers	Placenta	Placenta
5	chr16:82263400-82264200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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