Variant report

Variant	rs62053158
Chromosome Location	chr16:71774099-71774100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71766594..71769220-chr16:71770868..71774521,3	MCF-7	breast:
2	chr16:71660328..71663032-chr16:71772726..71774622,2	MCF-7	breast:
3	chr16:71770795..71772682-chr16:71774052..71776506,3	K562	blood:

Variant related genes	Relation type
ENSG00000260593	Chromatin interaction
ENSG00000140832	Chromatin interaction
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62053102	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62053136	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62053796	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	esv1819402	chr16:71755852-71816899	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71758600-71776800	Weak transcription	Fetal Heart	heart
2	chr16:71761000-71805600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:71761800-71778800	Weak transcription	Small Intestine	intestine
4	chr16:71762200-71811400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:71762600-71774400	Strong transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:71763200-71799800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr16:71763200-71812600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr16:71763400-71774600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr16:71763400-71776000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr16:71763400-71802200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr16:71763600-71784400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr16:71763600-71786200	Strong transcription	Osteobl	bone
13	chr16:71763600-71793000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr16:71763600-71800000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr16:71763600-71801400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr16:71763600-71812400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:71763800-71799600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:71763800-71804800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr16:71764000-71774400	Strong transcription	Primary T cells from cord blood	blood
20	chr16:71764000-71784200	Strong transcription	Fetal Muscle Trunk	muscle
21	chr16:71764000-71785200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr16:71764000-71804800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr16:71764000-71813000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr16:71764200-71784400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr16:71764400-71782000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr16:71764400-71784400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr16:71764400-71784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr16:71764600-71784600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr16:71764800-71774400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr16:71764800-71802600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr16:71765000-71774600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr16:71765600-71785200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:71766200-71774400	Strong transcription	Fetal Stomach	stomach
34	chr16:71767000-71778600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr16:71767000-71784600	Strong transcription	Fetal Muscle Leg	muscle
36	chr16:71767000-71787400	Weak transcription	Stomach Mucosa	stomach
37	chr16:71769000-71783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr16:71769200-71777400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr16:71770400-71774400	Strong transcription	Thymus	Thymus
40	chr16:71770400-71785600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr16:71770600-71774200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr16:71770600-71774400	Strong transcription	Fetal Kidney	kidney
43	chr16:71770600-71774800	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr16:71770600-71775800	Strong transcription	NHLF	lung
45	chr16:71770600-71777600	Strong transcription	GM12878-XiMat	blood
46	chr16:71770600-71784400	Strong transcription	Adipose Nuclei	Adipose
47	chr16:71770600-71784600	Strong transcription	Fetal Thymus	thymus
48	chr16:71770600-71793000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr16:71770600-71796000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:71770600-71798600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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