Variant report

Variant	rs62053221
Chromosome Location	chr16:73008060-73008061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73007881..73009600-chr16:73090024..73092207,2	MCF-7	breast:
2	chr16:73008041..73010023-chr16:73011857..73014230,2	MCF-7	breast:
3	chr16:72986297..72987877-chr16:73008044..73009620,2	MCF-7	breast:
4	chr16:73007103..73009444-chr16:73010986..73013693,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16971464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62053220	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62053222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62053223	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62053225	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62053226	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62053227	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72987200-73012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:72993400-73019600	Weak transcription	Hela-S3	cervix
3	chr16:72993600-73010400	Weak transcription	GM12878-XiMat	blood
4	chr16:72993600-73019000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr16:72993800-73009800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr16:72994200-73009600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr16:72994400-73012400	Weak transcription	A549	lung
8	chr16:72994600-73008400	Weak transcription	Ovary	ovary
9	chr16:72994800-73010400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:72995600-73011000	Weak transcription	Right Ventricle	heart
11	chr16:72996000-73011000	Weak transcription	Placenta	Placenta
12	chr16:72996000-73012200	Weak transcription	Spleen	Spleen
13	chr16:72996200-73017800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr16:72996400-73008200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr16:72996400-73012400	Weak transcription	Small Intestine	intestine
16	chr16:72996600-73010000	Weak transcription	Fetal Intestine Large	intestine
17	chr16:72996800-73018800	Weak transcription	NHLF	lung
18	chr16:72997000-73017800	Weak transcription	HSMMtube	muscle
19	chr16:72998400-73008200	Weak transcription	NH-A	brain
20	chr16:72998400-73018800	Weak transcription	Osteobl	bone
21	chr16:73001200-73019000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr16:73001400-73008400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr16:73002200-73019000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr16:73003000-73018000	Weak transcription	Brain Substantia Nigra	brain
25	chr16:73003200-73012200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:73003200-73018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr16:73003400-73017600	Weak transcription	HSMM	muscle
28	chr16:73003600-73012200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr16:73003800-73010000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr16:73003800-73019000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr16:73004000-73010000	Weak transcription	Fetal Muscle Leg	muscle
32	chr16:73004000-73010400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr16:73004000-73012400	Weak transcription	Adipose Nuclei	Adipose
34	chr16:73004400-73008400	Weak transcription	Gastric	stomach
35	chr16:73004400-73011000	Weak transcription	Fetal Lung	lung
36	chr16:73004600-73008400	Weak transcription	Right Atrium	heart
37	chr16:73004600-73010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:73005000-73019400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr16:73005400-73012400	Weak transcription	Esophagus	oesophagus
40	chr16:73005600-73008600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr16:73005600-73010400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr16:73005600-73012200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr16:73005600-73017600	Weak transcription	Brain Anterior Caudate	brain
44	chr16:73006400-73009600	Strong transcription	HepG2	liver
45	chr16:73006600-73012600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr16:73007000-73009800	Weak transcription	Colon Smooth Muscle	Colon
47	chr16:73007000-73018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr16:73007200-73008200	Weak transcription	Aorta	Aorta
49	chr16:73007400-73008200	Weak transcription	Psoas Muscle	Psoas
50	chr16:73007400-73017400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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