Variant report

Variant	rs62055056
Chromosome Location	chr16:71418999-71419000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11545954	0.85[ASN][1000 genomes]
rs12102284	0.83[EUR][1000 genomes]
rs4788799	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59788423	0.85[ASN][1000 genomes]
rs60352330	0.85[ASN][1000 genomes]
rs61069194	0.85[ASN][1000 genomes]
rs62055047	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62055048	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62055053	0.85[ASN][1000 genomes]
rs62055054	0.85[ASN][1000 genomes]
rs62055055	0.85[ASN][1000 genomes]
rs8063328	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3417792	chr16:71416447-71419521	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71398800-71419800	Weak transcription	Brain Germinal Matrix	brain
2	chr16:71416400-71419400	Strong transcription	Adipose Nuclei	Adipose
3	chr16:71416600-71419400	Enhancers	Esophagus	oesophagus
4	chr16:71416800-71420600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:71417400-71419000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:71417600-71420600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:71417600-71421200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:71417800-71419200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr16:71417800-71419600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:71417800-71420000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr16:71418000-71420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:71418200-71419400	Weak transcription	Fetal Brain Male	brain
13	chr16:71418400-71419000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:71418600-71419000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr16:71418600-71419000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr16:71418800-71419000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links