Variant report

Variant	rs62055082
Chromosome Location	chr16:73095335-73095336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:73093053-73095808	MCF10A-Er-Src	breast:	n/a	n/a
2	REST	chr16:73079663-73097378	H1-neurons	neurons:	n/a	chr16:73084142-73084155 chr16:73087431-73087444 chr16:73082371-73082384 chr16:73091909-73091929 chr16:73082047-73082060 chr16:73097037-73097057 chr16:73088004-73088022 chr16:73091374-73091387 chr16:73091745-73091758 chr16:73096963-73096973 chr16:73091633-73091646 chr16:73091913-73091926 chr16:73097037-73097057 chr16:73081695-73081715 chr16:73091544-73091557 chr16:73096925-73096938 chr16:73097330-73097339
3	SP1	chr16:73094967-73095639	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr16:73094812-73101535	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:72808782..72811039-chr16:73094813..73097689,2	MCF-7	breast:
2	chr16:72878570..72880938-chr16:73094933..73097735,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-44L9.1.1-12	chr16:73093800-73095621	NONHSAT143627
2	lnc-RP11-44L9.1.1-12	chr16:73094279-73096215	NONHSAT143628
3	lnc-RP11-44L9.1.1-12	chr16:73094369-73096215	ENSG00000271009.2

Variant related genes	Relation type
ZFHX3	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8052905	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv827730	chr16:73066699-73115642	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv827732	chr16:73069343-73116594	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv827733	chr16:73075114-73103721	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv1815924	chr16:73085286-73105415	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv827734	chr16:73090810-73096182	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv1837302	chr16:73091679-73102456	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73087800-73099200	Active TSS	Aorta	Aorta
2	chr16:73093000-73097400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr16:73093200-73098600	Weak transcription	Lung	lung
4	chr16:73093200-73100600	Weak transcription	Gastric	stomach
5	chr16:73093400-73096800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:73093400-73098000	Weak transcription	Pancreas	Pancrea
7	chr16:73093600-73095400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr16:73093600-73095600	Enhancers	HepG2	liver
9	chr16:73093600-73096600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr16:73093600-73096600	Weak transcription	Placenta	Placenta
11	chr16:73093600-73096800	Weak transcription	Ovary	ovary
12	chr16:73094000-73095600	Enhancers	HUVEC	blood vessel
13	chr16:73094000-73096800	Weak transcription	HMEC	breast
14	chr16:73094200-73096600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
15	chr16:73094400-73095400	Enhancers	Osteobl	bone
16	chr16:73094400-73096000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr16:73094400-73096200	Weak transcription	Brain Anterior Caudate	brain
18	chr16:73094400-73096400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr16:73094400-73096600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr16:73094400-73096600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr16:73094400-73096800	Weak transcription	Right Ventricle	heart
22	chr16:73094400-73097000	Enhancers	Liver	Liver
23	chr16:73094400-73097000	Active TSS	Stomach Smooth Muscle	stomach
24	chr16:73094400-73098000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr16:73094600-73096000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:73094600-73096200	Weak transcription	NHDF-Ad	bronchial
27	chr16:73094600-73096600	Enhancers	HSMMtube	muscle
28	chr16:73094800-73096000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr16:73094800-73096000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr16:73094800-73098200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr16:73095000-73096400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr16:73095000-73096600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
33	chr16:73095000-73099200	Weak transcription	Colon Smooth Muscle	Colon
34	chr16:73095200-73095600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr16:73095200-73095800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr16:73095200-73095800	Weak transcription	HSMM	muscle
37	chr16:73095200-73096000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:73095200-73096000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr16:73095200-73096400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
40	chr16:73095200-73096400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr16:73095200-73096400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr16:73095200-73096600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
43	chr16:73095200-73096600	Weak transcription	Right Atrium	heart
44	chr16:73095200-73096600	Enhancers	A549	lung
45	chr16:73095200-73096800	Active TSS	NHLF	lung
46	chr16:73095200-73097400	Weak transcription	Hela-S3	cervix
47	chr16:73095200-73100200	Weak transcription	Psoas Muscle	Psoas

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