Variant report

Variant	rs62056527
Chromosome Location	chr16:71912261-71912262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71907603..71909837-chr16:71910432..71912872,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs699450	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71881200-71916600	Weak transcription	Small Intestine	intestine
2	chr16:71881800-71914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:71881800-71914600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:71882000-71915600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:71882400-71914600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:71885200-71912800	Weak transcription	NHDF-Ad	bronchial
7	chr16:71885600-71916600	Weak transcription	Stomach Mucosa	stomach
8	chr16:71888000-71914800	Weak transcription	HUVEC	blood vessel
9	chr16:71888000-71916400	Weak transcription	NHEK	skin
10	chr16:71890200-71913000	Weak transcription	Osteobl	bone
11	chr16:71891000-71914000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr16:71894600-71916800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:71895800-71916400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr16:71896000-71913400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr16:71896000-71913800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:71896800-71916600	Weak transcription	NHLF	lung
17	chr16:71897800-71915600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:71898000-71916800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr16:71898200-71916600	Weak transcription	Psoas Muscle	Psoas
20	chr16:71898400-71912400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr16:71898400-71916800	Weak transcription	Right Ventricle	heart
22	chr16:71898600-71912400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr16:71898800-71914200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr16:71898800-71916400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr16:71898800-71916400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr16:71899000-71912800	Weak transcription	Left Ventricle	heart
27	chr16:71899000-71913200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr16:71899000-71913200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr16:71899000-71913400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr16:71899000-71913600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr16:71899000-71914200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr16:71899000-71916600	Weak transcription	Esophagus	oesophagus
33	chr16:71899000-71917000	Weak transcription	Pancreas	Pancrea
34	chr16:71899200-71914200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr16:71899400-71912800	Weak transcription	Fetal Brain Male	brain
36	chr16:71899400-71914400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:71899600-71913000	Weak transcription	Thymus	Thymus
38	chr16:71899600-71914200	Weak transcription	Spleen	Spleen
39	chr16:71899600-71916600	Weak transcription	Colonic Mucosa	Colon
40	chr16:71899800-71916800	Weak transcription	Brain Substantia Nigra	brain
41	chr16:71900200-71912400	Weak transcription	NH-A	brain
42	chr16:71900200-71917200	Weak transcription	Gastric	stomach
43	chr16:71901000-71912800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr16:71901200-71914000	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr16:71902200-71912800	Weak transcription	Dnd41	blood
46	chr16:71902200-71913400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr16:71902200-71915200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr16:71902200-71916800	Weak transcription	Aorta	Aorta
49	chr16:71902400-71913400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr16:71902600-71916600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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