Variant report

Variant	rs62056768
Chromosome Location	chr17:20887194-20887195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10512423	0.80[AMR][1000 genomes]
rs11204325	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11204327	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11204329	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11541311	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11650623	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11651078	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11651500	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11652224	0.85[AMR][1000 genomes]
rs11653213	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11653504	0.85[AMR][1000 genomes]
rs11654801	0.89[AMR][1000 genomes]
rs11655512	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11656525	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656662	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11656837	0.83[ASN][1000 genomes]
rs11658178	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11658389	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658671	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11658722	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11658742	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11658791	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869271	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16942330	0.85[AMR][1000 genomes]
rs16962375	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16962469	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16962470	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2009757	0.88[ASN][1000 genomes]
rs2291035	0.86[ASN][1000 genomes]
rs3785544	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3891644	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4985937	0.93[EUR][1000 genomes]
rs4985938	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4985939	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4985943	0.86[ASN][1000 genomes]
rs4985944	0.90[ASN][1000 genomes]
rs62055504	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62055511	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62056764	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62056765	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62056770	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62056771	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62056832	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62058987	0.80[AMR][1000 genomes]
rs62058990	0.80[AMR][1000 genomes]
rs62058991	0.80[AMR][1000 genomes]
rs62058993	0.80[AMR][1000 genomes]
rs716959	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7216145	0.82[ASN][1000 genomes]
rs7217797	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7218520	0.91[ASN][1000 genomes]
rs7221189	0.82[ASN][1000 genomes]
rs7501525	0.83[ASN][1000 genomes]
rs8079468	0.88[ASN][1000 genomes]
rs8080233	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9325900	0.80[ASN][1000 genomes]
rs9896109	0.82[ASN][1000 genomes]
rs9914432	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9972887	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv1064365	chr17:20801739-20890716	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949097	chr17:20801739-21406355	Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv529759	chr17:20839079-21529632	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv2006	chr17:20846763-20892730	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3378949	chr17:20886710-20888908	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20848200-20896600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:20862600-20890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:20873200-20890200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:20874600-20896600	Weak transcription	Spleen	Spleen
5	chr17:20881400-20896200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr17:20882800-20887400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:20884800-20887200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr17:20885000-20887200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:20885800-20892800	Weak transcription	HepG2	liver
10	chr17:20886400-20887200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr17:20886400-20887200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:20886800-20896400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr17:20887000-20896600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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