The 2.0 version of rSNPBase

Variant report

Variant rs62060271
Chromosome Location chr16:48611447-48611448
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:48583800-48617800 Weak transcription H9 Cell Line embryonic stem cell
2 chr16:48591200-48611600 Weak transcription Fetal Brain Female brain
3 chr16:48591400-48617200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr16:48592600-48613400 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr16:48594000-48617800 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr16:48595200-48624000 Weak transcription H1 Cell Line embryonic stem cell
7 chr16:48596000-48613600 Weak transcription Fetal Intestine Large intestine
8 chr16:48596000-48624400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr16:48596200-48612800 Weak transcription Fetal Muscle Trunk muscle
10 chr16:48596200-48612800 Weak transcription Placenta Placenta
11 chr16:48596200-48615200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr16:48596400-48611800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr16:48596400-48613400 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr16:48596400-48615000 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr16:48596400-48617200 Weak transcription NH-A brain
16 chr16:48596600-48612200 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr16:48596800-48624400 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr16:48602000-48611600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr16:48603000-48614200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr16:48604400-48611800 Weak transcription Fetal Muscle Leg muscle
21 chr16:48604800-48611600 Enhancers Primary T helper cells PMA-I stimulated --
22 chr16:48605000-48613000 Enhancers Primary T killer naive cells fromperipheralblood blood
23 chr16:48605000-48613200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr16:48605000-48630200 Weak transcription Spleen Spleen
25 chr16:48605200-48612400 Enhancers Primary T helper cells fromperipheralblood blood
26 chr16:48605400-48613400 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr16:48606200-48611600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
28 chr16:48606800-48611600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr16:48607000-48613400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
30 chr16:48607800-48611600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr16:48607800-48613000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr16:48608000-48611800 Enhancers Primary T killer memory cells from peripheral blood blood
33 chr16:48608200-48613000 Enhancers Primary T helper naive cells fromperipheralblood blood
34 chr16:48608200-48613000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr16:48608400-48612200 Enhancers Left Ventricle heart
36 chr16:48608600-48612200 Enhancers HMEC breast
37 chr16:48608600-48613200 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr16:48608600-48613600 Enhancers Primary T helper naive cells from peripheral blood blood
39 chr16:48608800-48611600 Enhancers Sigmoid Colon Sigmoid Colon
40 chr16:48608800-48611600 Enhancers Stomach Mucosa stomach
41 chr16:48609000-48612800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr16:48609000-48613200 Weak transcription Duodenum Mucosa Duodenum
43 chr16:48609200-48612000 Enhancers Pancreas Pancrea
44 chr16:48609400-48611800 Enhancers Primary hematopoietic stem cells short term culture blood
45 chr16:48609600-48611600 Enhancers Primary neutrophils fromperipheralblood blood
46 chr16:48609800-48611600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr16:48609800-48611600 Weak transcription Aorta Aorta
48 chr16:48609800-48612800 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr16:48609800-48612800 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr16:48609800-48613200 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015