Variant report

Variant	rs62065170
Chromosome Location	chr17:38154371-38154372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38139073..38144871-chr17:38149897..38154984,7	K562	blood:
2	chr17:38152599..38155402-chr17:38158806..38161805,3	K562	blood:
3	chr17:38152976..38154813-chr17:38189662..38192619,2	K562	blood:
4	chr17:38148349..38150160-chr17:38151852..38154932,3	K562	blood:

Variant related genes	Relation type
ENSG00000008838	Chromatin interaction
ENSG00000108344	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62065168	1.00[EUR][1000 genomes]
rs62065210	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38139200-38154800	Strong transcription	Fetal Intestine Small	intestine
2	chr17:38139400-38154400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:38139400-38155000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr17:38139600-38154400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr17:38139600-38154600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr17:38139600-38154800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:38139600-38155000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr17:38139600-38155200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:38139600-38155400	Strong transcription	Placenta	Placenta
10	chr17:38139600-38155600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:38139600-38155600	Strong transcription	Fetal Thymus	thymus
12	chr17:38139800-38154400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr17:38139800-38154400	Strong transcription	HMEC	breast
14	chr17:38139800-38154600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr17:38139800-38154600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr17:38139800-38154800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr17:38139800-38155000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:38139800-38155000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:38139800-38155000	Strong transcription	A549	lung
20	chr17:38139800-38155600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr17:38140000-38154400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:38140000-38154400	Strong transcription	Right Ventricle	heart
23	chr17:38140000-38154600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr17:38140000-38154600	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr17:38140000-38154600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr17:38140000-38154600	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr17:38140000-38154600	Strong transcription	Brain Hippocampus Middle	brain
28	chr17:38140000-38154600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr17:38140000-38154600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr17:38140000-38154600	Strong transcription	Fetal Intestine Large	intestine
31	chr17:38140000-38155000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr17:38140000-38155000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr17:38140000-38155000	Strong transcription	Rectal Smooth Muscle	rectum
34	chr17:38140000-38155000	Strong transcription	HSMM	muscle
35	chr17:38140000-38155200	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr17:38140000-38155800	Strong transcription	Fetal Stomach	stomach
37	chr17:38140200-38154400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr17:38140200-38154400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr17:38140200-38154400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr17:38140200-38154400	Strong transcription	HepG2	liver
41	chr17:38140200-38155000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr17:38140400-38154400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr17:38140400-38154400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr17:38140400-38154400	Strong transcription	Brain Cingulate Gyrus	brain
45	chr17:38140400-38154800	Strong transcription	Thymus	Thymus
46	chr17:38140400-38155000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr17:38140400-38155000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr17:38140400-38155000	Strong transcription	Colon Smooth Muscle	Colon
49	chr17:38140400-38155000	Strong transcription	GM12878-XiMat	blood
50	chr17:38140400-38155600	Strong transcription	Stomach Smooth Muscle	stomach

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