Variant report

Variant	rs62066213
Chromosome Location	chr17:17531709-17531710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17494324..17496694-chr17:17529584..17532254,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264666	Chromatin interaction
ENSG00000133027	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12449964	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12936587	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9630706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891340	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv20304	chr17:17525592-17533785	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv907751	chr17:17530554-17581184	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17525400-17531800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:17526600-17532000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:17528800-17543400	Weak transcription	Spleen	Spleen
4	chr17:17530000-17531800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr17:17530200-17532000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:17530600-17531800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr17:17530600-17532000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr17:17530600-17532000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr17:17530600-17532000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr17:17530600-17532000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr17:17530600-17532200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr17:17530600-17536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:17530800-17531800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:17530800-17532000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr17:17530800-17532200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr17:17531400-17532000	Enhancers	Primary B cells from peripheral blood	blood
17	chr17:17531400-17532000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:17531600-17531800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr17:17531600-17531800	Enhancers	Thymus	Thymus
20	chr17:17531600-17531800	Enhancers	GM12878-XiMat	blood
21	chr17:17531600-17532000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr17:17531600-17532000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr17:17531600-17532000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:17531600-17532200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links