Variant report

Variant	rs62075607
Chromosome Location	chr17:45213110-45213111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45211653..45214560-chr17:45231641..45234372,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYL4-2	chr17:45212171-45213246	ENSG00000249938

Variant related genes	Relation type
ENSG00000004897	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv2760450	chr17:45130777-45225222	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv908563	chr17:45158537-45230311	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3446894	chr17:45211417-45213120	Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3410494	chr17:45212866-45213121	ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv962332	chr17:45212872-45214587	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv1796833	chr17:45212898-45244822	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv19172	chr17:45212900-45214698	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv7866	chr17:45213029-45213675	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3346798	chr17:45213074-45213692	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv3389305	chr17:45213086-45213674	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv3400089	chr17:45213111-45213637	ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45194800-45214400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:45194800-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:45206400-45215200	Weak transcription	Brain Germinal Matrix	brain
4	chr17:45210400-45218600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:45211200-45213200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:45212600-45214600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr17:45212600-45214600	Weak transcription	Fetal Brain Female	brain
8	chr17:45212600-45214800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr17:45212800-45213200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
10	chr17:45212800-45213200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
11	chr17:45212800-45213200	Active TSS	Aorta	Aorta
12	chr17:45212800-45213200	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr17:45212800-45213200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
14	chr17:45212800-45213200	Flanking Bivalent TSS/Enh	A549	lung
15	chr17:45212800-45213200	ZNF genes & repeats	K562	blood
16	chr17:45212800-45213400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:45212800-45213400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr17:45212800-45213400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr17:45212800-45213400	ZNF genes & repeats	Fetal Thymus	thymus
20	chr17:45212800-45213400	ZNF genes & repeats	NHDF-Ad	bronchial
21	chr17:45212800-45213400	ZNF genes & repeats	NHLF	lung
22	chr17:45212800-45213400	ZNF genes & repeats	Osteobl	bone
23	chr17:45212800-45214800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr17:45212800-45214800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
25	chr17:45212800-45214800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:45212800-45214800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:45212800-45214800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
28	chr17:45212800-45214800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr17:45212800-45214800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr17:45212800-45214800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr17:45212800-45214800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr17:45212800-45214800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr17:45212800-45214800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr17:45212800-45214800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
35	chr17:45212800-45214800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
36	chr17:45212800-45214800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
37	chr17:45212800-45214800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr17:45212800-45214800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr17:45212800-45214800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr17:45212800-45214800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:45212800-45214800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr17:45212800-45214800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr17:45212800-45214800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
44	chr17:45212800-45214800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
45	chr17:45212800-45214800	ZNF genes & repeats	Primary B cells from cord blood	blood
46	chr17:45212800-45214800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
47	chr17:45212800-45214800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
48	chr17:45212800-45214800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr17:45212800-45214800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
50	chr17:45212800-45214800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood

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