Variant report

Variant	rs62075930
Chromosome Location	chr17:45074455-45074456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11651232	0.97[ASN][1000 genomes]
rs11651386	0.93[ASN][1000 genomes]
rs11656290	0.95[ASN][1000 genomes]
rs11656787	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11657300	0.93[ASN][1000 genomes]
rs12449354	0.96[ASN][1000 genomes]
rs12603324	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16941434	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941443	0.89[EUR][1000 genomes]
rs2316327	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2316757	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2316759	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2317995	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2317996	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2873608	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851794	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851797	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851800	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851802	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3863499	0.95[ASN][1000 genomes]
rs3883305	0.84[EUR][1000 genomes]
rs3892426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3892427	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3892428	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3892678	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3901590	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4274483	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4305136	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4468691	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4569351	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4968294	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4968295	0.98[ASN][1000 genomes]
rs4968296	0.98[ASN][1000 genomes]
rs58736644	0.84[EUR][1000 genomes]
rs61173406	0.95[ASN][1000 genomes]
rs6504635	0.90[ASN][1000 genomes]
rs6504637	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6504638	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6504640	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6504647	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7210126	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7214665	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7219480	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7221913	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8064764	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8064863	0.95[ASN][1000 genomes]
rs8065072	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8065103	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8068375	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8069682	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8071977	0.92[ASN][1000 genomes]
rs8073175	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8073261	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8074704	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8074861	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8075457	0.94[ASN][1000 genomes]
rs8078196	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8078665	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8081157	0.93[ASN][1000 genomes]
rs9891441	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9891658	0.94[ASN][1000 genomes]
rs9910512	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989485	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3492820	chr17:44174959-45161556	Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3492821	chr17:44174959-45161556	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3502492	chr17:44305975-45169159	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv3502493	chr17:44305975-45169159	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv908562	chr17:44828931-45102413	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv949295	chr17:44836653-45080757	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
7	nsv833466	chr17:45020360-45204537	Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
9	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62075930	RPRML	cis	Muscle Skeletal	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45057000-45078400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr17:45057200-45086800	Weak transcription	Right Atrium	heart
3	chr17:45057200-45100000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr17:45057800-45082400	Weak transcription	Brain Angular Gyrus	brain
5	chr17:45060200-45078400	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:45060200-45080800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr17:45061400-45086600	Weak transcription	Fetal Stomach	stomach
8	chr17:45061800-45087600	Weak transcription	Spleen	Spleen
9	chr17:45062200-45113200	Weak transcription	Ovary	ovary
10	chr17:45062600-45078400	Weak transcription	Pancreas	Pancrea
11	chr17:45064200-45083000	Weak transcription	Brain Germinal Matrix	brain
12	chr17:45069400-45078400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr17:45070000-45078000	Weak transcription	Primary B cells from cord blood	blood
14	chr17:45071200-45082200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr17:45073000-45082400	Weak transcription	Brain Substantia Nigra	brain
16	chr17:45073800-45075000	Enhancers	Primary B cells from peripheral blood	blood
17	chr17:45074000-45078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr17:45074000-45081800	Weak transcription	HUVEC	blood vessel

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