Variant report

Variant	rs62078950
Chromosome Location	chr18:9739180-9739181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9732492..9734472-chr18:9738392..9739946,2	MCF-7	breast:
2	chr18:9703929..9707573-chr18:9737119..9740388,3	K562	blood:
3	chr18:9729801..9734726-chr18:9735904..9739407,5	K562	blood:
4	chr18:9738452..9742707-chr18:9761334..9764195,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17431841	1.00[ASN][1000 genomes]
rs55680369	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1064807	chr18:9695356-9770358	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9720000-9742000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr18:9721000-9741600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:9732600-9741600	Weak transcription	Ovary	ovary
4	chr18:9732800-9740800	Weak transcription	Adipose Nuclei	Adipose
5	chr18:9732800-9741600	Weak transcription	Colon Smooth Muscle	Colon
6	chr18:9733000-9742000	Weak transcription	Aorta	Aorta
7	chr18:9733000-9743600	Weak transcription	Gastric	stomach
8	chr18:9733800-9742000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr18:9734400-9741600	Weak transcription	Right Atrium	heart
10	chr18:9734400-9741800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:9734400-9741800	Weak transcription	Fetal Lung	lung
12	chr18:9734600-9739600	Weak transcription	Esophagus	oesophagus
13	chr18:9734600-9741600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr18:9734600-9741600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr18:9734600-9741600	Weak transcription	Spleen	Spleen
16	chr18:9734600-9741800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr18:9734800-9741400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr18:9734800-9742000	Weak transcription	Stomach Mucosa	stomach
19	chr18:9734800-9742200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr18:9735000-9741600	Weak transcription	Colonic Mucosa	Colon
21	chr18:9735400-9740400	Genic enhancers	Hela-S3	cervix
22	chr18:9735600-9740800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr18:9735600-9741400	Weak transcription	Lung	lung
24	chr18:9735600-9741800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr18:9735800-9740800	Weak transcription	Placenta	Placenta
26	chr18:9736000-9741600	Weak transcription	Fetal Muscle Leg	muscle
27	chr18:9736000-9741800	Weak transcription	Fetal Stomach	stomach
28	chr18:9736200-9739400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr18:9736200-9739600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr18:9736200-9740200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr18:9736200-9741600	Weak transcription	Primary B cells from cord blood	blood
32	chr18:9736200-9742000	Weak transcription	Fetal Thymus	thymus
33	chr18:9736600-9741400	Weak transcription	HepG2	liver
34	chr18:9736600-9741800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr18:9736600-9741800	Weak transcription	Small Intestine	intestine
36	chr18:9737600-9742400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr18:9737600-9742600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr18:9737800-9739200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr18:9737800-9739600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr18:9737800-9739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr18:9737800-9741800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr18:9737800-9742000	Weak transcription	Fetal Kidney	kidney
43	chr18:9738000-9739600	Weak transcription	NHEK	skin
44	chr18:9738000-9739600	Weak transcription	Osteobl	bone
45	chr18:9738000-9739800	Weak transcription	HUVEC	blood vessel
46	chr18:9738000-9740000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr18:9738000-9740800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr18:9738000-9741800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr18:9738000-9744000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr18:9738200-9739800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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