Variant report

Variant	rs62082922
Chromosome Location	chr18:24738441-24738442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs28374128	0.82[ASN][1000 genomes]
rs28377196	0.82[ASN][1000 genomes]
rs28407882	0.91[ASN][1000 genomes]
rs28421022	0.82[ASN][1000 genomes]
rs28422861	0.82[ASN][1000 genomes]
rs28430781	0.91[ASN][1000 genomes]
rs28447060	0.82[ASN][1000 genomes]
rs28527345	0.82[ASN][1000 genomes]
rs28540832	0.82[ASN][1000 genomes]
rs28592609	0.82[ASN][1000 genomes]
rs28625571	0.82[ASN][1000 genomes]
rs28626613	0.82[ASN][1000 genomes]
rs28628505	0.82[ASN][1000 genomes]
rs28636962	0.82[ASN][1000 genomes]
rs28638047	0.82[ASN][1000 genomes]
rs28655160	0.82[ASN][1000 genomes]
rs28658184	0.82[ASN][1000 genomes]
rs28659873	0.91[ASN][1000 genomes]
rs28666617	0.82[ASN][1000 genomes]
rs28669309	0.82[ASN][1000 genomes]
rs28675069	0.82[ASN][1000 genomes]
rs28689713	0.82[ASN][1000 genomes]
rs28690572	0.82[ASN][1000 genomes]
rs28693844	0.91[ASN][1000 genomes]
rs9944690	0.82[ASN][1000 genomes]
rs9946111	0.82[ASN][1000 genomes]
rs9947740	0.91[ASN][1000 genomes]
rs9947754	0.91[ASN][1000 genomes]
rs9948063	0.82[ASN][1000 genomes]
rs9948516	0.91[ASN][1000 genomes]
rs9948956	0.82[ASN][1000 genomes]
rs9949945	0.82[ASN][1000 genomes]
rs9950392	0.91[ASN][1000 genomes]
rs9950774	0.82[ASN][1000 genomes]
rs9950985	0.82[ASN][1000 genomes]
rs9951105	0.91[ASN][1000 genomes]
rs9951527	0.82[ASN][1000 genomes]
rs9951666	0.91[ASN][1000 genomes]
rs9952545	0.91[ASN][1000 genomes]
rs9953272	0.82[ASN][1000 genomes]
rs9954010	0.82[ASN][1000 genomes]
rs9955379	0.91[ASN][1000 genomes]
rs9955513	0.82[ASN][1000 genomes]
rs9955608	0.82[ASN][1000 genomes]
rs9955617	0.82[ASN][1000 genomes]
rs9957834	0.82[ASN][1000 genomes]
rs9958309	0.91[ASN][1000 genomes]
rs9958520	0.91[ASN][1000 genomes]
rs9958672	0.82[ASN][1000 genomes]
rs9958959	0.82[ASN][1000 genomes]
rs9959209	0.91[ASN][1000 genomes]
rs9959230	0.91[ASN][1000 genomes]
rs9959436	0.82[ASN][1000 genomes]
rs9959629	0.82[ASN][1000 genomes]
rs9959749	0.82[ASN][1000 genomes]
rs9960539	0.91[ASN][1000 genomes]
rs9963925	0.91[ASN][1000 genomes]
rs9966121	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv909476	chr18:24722839-24779601	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv909477	chr18:24727747-24744027	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1810563	chr18:24727747-24773141	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3337986	chr18:24737003-24758526	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24730600-24744600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:24731600-24743400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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