Variant report

Variant	rs62085537
Chromosome Location	chr18:8945605-8945606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8945082..8946777-chr18:8948089..8950615,2	K562	blood:
2	chr18:8944596..8946523-chr18:8951781..8953416,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12953973	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12965683	1.00[AFR][1000 genomes]
rs34156538	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62085542	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8937600-8948000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:8939000-8945800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:8941800-8948800	Enhancers	NHDF-Ad	bronchial
4	chr18:8942000-8946000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr18:8942000-8946000	Enhancers	NH-A	brain
6	chr18:8942000-8946000	Enhancers	NHLF	lung
7	chr18:8942600-8946000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr18:8943000-8947600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr18:8943200-8946000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr18:8943200-8946000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr18:8943200-8947800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr18:8943400-8947600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr18:8943400-8948200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:8943600-8946000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr18:8943600-8946000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr18:8943600-8946200	Enhancers	HMEC	breast
17	chr18:8943800-8945800	Enhancers	Primary B cells from peripheral blood	blood
18	chr18:8943800-8946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:8943800-8946200	Enhancers	NHEK	skin
20	chr18:8944200-8946000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr18:8944400-8945800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr18:8944400-8946000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:8944400-8946000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr18:8944400-8946800	Enhancers	Osteobl	bone
25	chr18:8944400-8947600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr18:8944400-8947800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr18:8944400-8948600	Weak transcription	Stomach Mucosa	stomach
28	chr18:8944600-8947600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr18:8944800-8945800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr18:8944800-8947600	Weak transcription	Fetal Brain Male	brain
31	chr18:8945000-8945800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr18:8945000-8945800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr18:8945200-8945800	Flanking Active TSS	HSMMtube	muscle
34	chr18:8945200-8946000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr18:8945200-8947600	Weak transcription	Dnd41	blood
36	chr18:8945400-8945800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr18:8945400-8945800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr18:8945400-8946000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr18:8945400-8946000	Flanking Active TSS	HSMM	muscle
40	chr18:8945400-8947800	Weak transcription	Fetal Thymus	thymus
41	chr18:8945400-8948000	Weak transcription	Primary B cells from cord blood	blood
42	chr18:8945400-8948400	Weak transcription	Brain Germinal Matrix	brain
43	chr18:8945600-8946200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr18:8945600-8947600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr18:8945600-8947800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links