Variant report

Variant	rs62085928
Chromosome Location	chr18:9238874-9238875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9237160..9239505-chr18:9239914..9242638,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62085930	0.92[EUR][1000 genomes]
rs71362074	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1055696	chr18:9191679-9309805	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9192200-9284000	Weak transcription	NHEK	skin
2	chr18:9211800-9254800	Weak transcription	NH-A	brain
3	chr18:9212200-9254200	Weak transcription	Hela-S3	cervix
4	chr18:9216000-9250000	Weak transcription	Small Intestine	intestine
5	chr18:9216000-9289600	Weak transcription	HMEC	breast
6	chr18:9223000-9241400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr18:9224400-9240600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr18:9228200-9258000	Weak transcription	Fetal Heart	heart
9	chr18:9230600-9241800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr18:9232400-9240800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr18:9232600-9239400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr18:9232600-9254200	Weak transcription	HUVEC	blood vessel
13	chr18:9232600-9261400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:9232800-9241400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr18:9232800-9242000	Strong transcription	Primary T cells from cord blood	blood
16	chr18:9232800-9243200	Weak transcription	HSMMtube	muscle
17	chr18:9232800-9248000	Weak transcription	Fetal Brain Male	brain
18	chr18:9232800-9273000	Weak transcription	Fetal Kidney	kidney
19	chr18:9233000-9244800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr18:9233200-9242400	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr18:9233200-9244800	Strong transcription	Liver	Liver
22	chr18:9233200-9245000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr18:9233200-9249600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr18:9233200-9264200	Weak transcription	Brain Anterior Caudate	brain
25	chr18:9233400-9240800	Strong transcription	Primary B cells from peripheral blood	blood
26	chr18:9233400-9241000	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr18:9233400-9256400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr18:9233400-9265800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr18:9233600-9239800	Strong transcription	NHDF-Ad	bronchial
30	chr18:9233600-9241200	Strong transcription	Primary B cells from cord blood	blood
31	chr18:9233600-9244800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr18:9233800-9240600	Strong transcription	Fetal Intestine Large	intestine
33	chr18:9233800-9241000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr18:9233800-9241200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr18:9234000-9243200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr18:9234200-9242400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr18:9234200-9245000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr18:9234200-9253600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr18:9234200-9264200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr18:9234400-9243000	Weak transcription	Brain Substantia Nigra	brain
41	chr18:9234400-9254200	Weak transcription	Fetal Thymus	thymus
42	chr18:9234400-9280400	Weak transcription	Psoas Muscle	Psoas
43	chr18:9234600-9240000	Weak transcription	HSMM	muscle
44	chr18:9234600-9242000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr18:9234600-9243200	Weak transcription	Osteobl	bone
46	chr18:9234600-9256400	Weak transcription	Brain Germinal Matrix	brain
47	chr18:9234600-9264800	Weak transcription	Colonic Mucosa	Colon
48	chr18:9234600-9278000	Weak transcription	Brain Angular Gyrus	brain
49	chr18:9234800-9239600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr18:9234800-9240600	Weak transcription	Left Ventricle	heart

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