Variant report

Variant	rs62085938
Chromosome Location	chr17:66464324-66464325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66458968..66465648-chr17:66506510..66510180,10	MCF-7	breast:
2	chr17:66460499..66464491-chr17:66506500..66510531,5	MCF-7	breast:
3	chr17:66459308..66461889-chr17:66462514..66465217,2	K562	blood:
4	chr17:66463233..66464971-chr17:66754716..66757139,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11653260	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12943658	0.83[EUR][1000 genomes]
rs7209319	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66454600-66465200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:66454600-66470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:66456800-66470400	Weak transcription	Right Ventricle	heart
4	chr17:66459200-66466200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:66460400-66470400	Weak transcription	Ovary	ovary
6	chr17:66461400-66465200	Enhancers	Fetal Muscle Leg	muscle
7	chr17:66462400-66464400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr17:66462400-66464400	Weak transcription	HepG2	liver
9	chr17:66462400-66464400	Weak transcription	NHDF-Ad	bronchial
10	chr17:66462600-66467600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:66462800-66470400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr17:66463200-66464400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr17:66463400-66465800	Flanking Active TSS	Fetal Heart	heart
14	chr17:66463600-66464400	Enhancers	HSMMtube	muscle
15	chr17:66463600-66465200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:66464000-66465200	Enhancers	Aorta	Aorta
17	chr17:66464000-66465800	Enhancers	HSMM	muscle
18	chr17:66464200-66464800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr17:66464200-66464800	Enhancers	NHLF	lung
20	chr17:66464200-66465200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:66464200-66465200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr17:66464200-66465600	Enhancers	NH-A	brain
23	chr17:66464200-66468600	Weak transcription	Left Ventricle	heart

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