Variant report

Variant	rs62087475
Chromosome Location	chr18:9369701-9369702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61067716	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087470	0.91[ASN][1000 genomes]
rs62087474	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62087477	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087495	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62087497	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72941944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv909365	chr18:9299538-9400422	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9335400-9371400	Weak transcription	Gastric	stomach
2	chr18:9335600-9372600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr18:9335800-9370200	Weak transcription	Adipose Nuclei	Adipose
4	chr18:9341000-9371800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr18:9341200-9391400	Weak transcription	Liver	Liver
6	chr18:9341200-9403800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr18:9344400-9404200	Weak transcription	Primary T cells from cord blood	blood
8	chr18:9345600-9377600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr18:9354400-9380400	Weak transcription	NHLF	lung
10	chr18:9360400-9403000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr18:9360600-9374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr18:9361800-9380200	Weak transcription	Small Intestine	intestine
13	chr18:9362000-9380400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr18:9362400-9380000	Weak transcription	Brain Germinal Matrix	brain
15	chr18:9362800-9374400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr18:9363200-9369800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr18:9363200-9380200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr18:9364200-9370200	Strong transcription	Fetal Stomach	stomach
19	chr18:9364800-9409400	Weak transcription	Aorta	Aorta
20	chr18:9365800-9372200	Weak transcription	Right Ventricle	heart
21	chr18:9366600-9370400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:9366600-9374000	Weak transcription	Osteobl	bone
23	chr18:9366600-9375400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr18:9366600-9379800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr18:9366600-9380000	Weak transcription	Brain Angular Gyrus	brain
26	chr18:9366600-9380000	Weak transcription	Colon Smooth Muscle	Colon
27	chr18:9366600-9380200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr18:9366600-9380200	Weak transcription	Brain Anterior Caudate	brain
29	chr18:9366600-9380200	Weak transcription	Ovary	ovary
30	chr18:9366600-9380200	Weak transcription	HSMMtube	muscle
31	chr18:9366600-9380600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr18:9366600-9381000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr18:9366600-9389400	Weak transcription	HSMM	muscle
34	chr18:9366600-9390600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr18:9366600-9390800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr18:9366600-9396200	Weak transcription	NH-A	brain
37	chr18:9366600-9406000	Weak transcription	Esophagus	oesophagus
38	chr18:9366800-9390600	Weak transcription	HUVEC	blood vessel
39	chr18:9366800-9397000	Weak transcription	NHEK	skin
40	chr18:9367400-9370000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr18:9367800-9373200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr18:9367800-9377800	Weak transcription	Fetal Intestine Large	intestine
43	chr18:9367800-9378000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr18:9367800-9379200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr18:9367800-9380600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr18:9367800-9385400	Weak transcription	Lung	lung
47	chr18:9367800-9390800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr18:9367800-9395600	Weak transcription	Left Ventricle	heart
49	chr18:9368000-9371600	Weak transcription	Fetal Brain Male	brain
50	chr18:9368200-9369800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links