Variant report

Variant	rs62087553
Chromosome Location	chr18:45496578-45496579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45495428..45497776-chr18:45515164..45517181,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17741495	1.00[AFR][1000 genomes]
rs17813836	1.00[AFR][1000 genomes]
rs3935042	1.00[AFR][1000 genomes]
rs62087550	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45494200-45496600	Enhancers	HSMM	muscle
2	chr18:45494400-45498200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:45494600-45499000	Weak transcription	Ovary	ovary
4	chr18:45494800-45497400	Weak transcription	Fetal Heart	heart
5	chr18:45495200-45496800	Enhancers	NH-A	brain
6	chr18:45495200-45497800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:45495200-45498000	Enhancers	Hela-S3	cervix
8	chr18:45495400-45496600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr18:45495400-45497600	Enhancers	A549	lung
10	chr18:45495400-45498800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr18:45495400-45501600	Weak transcription	Placenta	Placenta
12	chr18:45495600-45496600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:45495800-45497200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr18:45495800-45498400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr18:45495800-45498800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr18:45495800-45498800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr18:45495800-45499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr18:45496000-45497000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr18:45496000-45497000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr18:45496000-45497600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr18:45496000-45498800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr18:45496000-45498800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr18:45496000-45499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr18:45496000-45499600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr18:45496200-45498000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr18:45496200-45498800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr18:45496200-45499600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr18:45496400-45498200	Enhancers	K562	blood
29	chr18:45496400-45499000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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