Variant report

Variant	rs62089549
Chromosome Location	chr18:8088589-8088590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10513902	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1942954	0.95[ASN][1000 genomes]
rs34818456	0.95[ASN][1000 genomes]
rs62089548	0.98[ASN][1000 genomes]
rs67464310	0.98[ASN][1000 genomes]
rs9807802	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8052600-8105200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr18:8065600-8101600	Weak transcription	Aorta	Aorta
3	chr18:8066200-8094000	Weak transcription	Hela-S3	cervix
4	chr18:8067400-8110200	Weak transcription	Right Ventricle	heart
5	chr18:8067600-8094800	Weak transcription	NHDF-Ad	bronchial
6	chr18:8068000-8092400	Weak transcription	Thymus	Thymus
7	chr18:8068000-8094800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr18:8068000-8100000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr18:8068400-8095200	Weak transcription	Lung	lung
10	chr18:8068400-8101600	Weak transcription	Fetal Stomach	stomach
11	chr18:8068400-8102400	Weak transcription	Fetal Thymus	thymus
12	chr18:8068600-8124800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:8069000-8102200	Weak transcription	Fetal Muscle Leg	muscle
14	chr18:8069000-8102400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr18:8069000-8102400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr18:8069400-8103400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr18:8069600-8102400	Weak transcription	Brain Anterior Caudate	brain
18	chr18:8070000-8093200	Weak transcription	Fetal Lung	lung
19	chr18:8070000-8097600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr18:8074200-8102400	Weak transcription	Psoas Muscle	Psoas
21	chr18:8079000-8092600	Weak transcription	Ovary	ovary
22	chr18:8080600-8091000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:8082200-8092600	Weak transcription	Gastric	stomach
24	chr18:8084400-8102800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr18:8084600-8102600	Weak transcription	NH-A	brain
26	chr18:8084600-8108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr18:8084800-8088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr18:8085200-8088600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr18:8085200-8091000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr18:8085200-8093800	Weak transcription	Osteobl	bone
31	chr18:8085200-8096600	Weak transcription	Fetal Heart	heart
32	chr18:8085200-8102800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr18:8085400-8088600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr18:8085400-8101800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr18:8085600-8093400	Weak transcription	HSMM	muscle
36	chr18:8085800-8088600	Weak transcription	Primary T cells from cord blood	blood
37	chr18:8085800-8088800	Strong transcription	A549	lung
38	chr18:8086200-8102400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr18:8086400-8102400	Weak transcription	Adipose Nuclei	Adipose
40	chr18:8086400-8102600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr18:8086600-8088600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr18:8086600-8091000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr18:8086800-8090800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr18:8087600-8088600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr18:8087800-8090800	Strong transcription	Left Ventricle	heart
46	chr18:8087800-8091400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr18:8088000-8088800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr18:8088400-8088600	Enhancers	Rectal Smooth Muscle	rectum
49	chr18:8088400-8088800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr18:8088400-8089000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links