Variant report

Variant	rs62097320
Chromosome Location	chr18:13262427-13262428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13261882..13264045-chr18:13540401..13542351,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3372035	chr18:13260052-13264450	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3448583	chr18:13261252-13264050	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3405323	chr18:13261252-13267450	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1008130	chr18:13261871-13263196	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv12934	chr18:13261871-13263406	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv576528	chr18:13262058-13263192	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13243600-13278200	Weak transcription	Dnd41	blood
2	chr18:13253000-13267800	Weak transcription	Gastric	stomach
3	chr18:13256800-13268400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:13258600-13268600	Enhancers	Right Ventricle	heart
5	chr18:13259200-13262600	Enhancers	Lung	lung
6	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:13259800-13267800	Enhancers	Fetal Brain Male	brain
8	chr18:13260000-13263800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:13260000-13266200	Enhancers	Rectal Smooth Muscle	rectum
10	chr18:13260600-13263200	Weak transcription	Fetal Brain Female	brain
11	chr18:13260800-13268200	Weak transcription	Liver	Liver
12	chr18:13261200-13264200	Weak transcription	Psoas Muscle	Psoas
13	chr18:13261200-13266000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:13261200-13266200	Weak transcription	Pancreas	Pancrea
15	chr18:13261200-13268200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr18:13261200-13282200	Weak transcription	Small Intestine	intestine
17	chr18:13261400-13265600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr18:13261400-13266000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr18:13261400-13268000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr18:13261600-13263200	Weak transcription	Thymus	Thymus
21	chr18:13261600-13264200	Weak transcription	Brain Germinal Matrix	brain
22	chr18:13261600-13265600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr18:13261600-13265800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr18:13261800-13267000	Weak transcription	Fetal Kidney	kidney
25	chr18:13262000-13263200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr18:13262000-13267800	Weak transcription	Ovary	ovary
27	chr18:13262200-13262600	Genic enhancers	Primary T cells from cord blood	blood
28	chr18:13262200-13263200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr18:13262200-13263200	Weak transcription	Left Ventricle	heart
30	chr18:13262200-13263400	Weak transcription	Brain Angular Gyrus	brain
31	chr18:13262200-13263400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr18:13262200-13263400	Weak transcription	Right Atrium	heart
33	chr18:13262200-13263400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr18:13262200-13264000	Weak transcription	Brain Hippocampus Middle	brain
35	chr18:13262200-13264000	Enhancers	Stomach Smooth Muscle	stomach
36	chr18:13262200-13264200	Weak transcription	Aorta	Aorta
37	chr18:13262200-13264400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr18:13262200-13265200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr18:13262200-13265200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr18:13262200-13265200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr18:13262200-13265600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr18:13262200-13265600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr18:13262200-13266600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr18:13262200-13268200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr18:13262200-13270000	Weak transcription	Stomach Mucosa	stomach
46	chr18:13262400-13262800	Weak transcription	Colon Smooth Muscle	Colon
47	chr18:13262400-13262800	Weak transcription	Esophagus	oesophagus
48	chr18:13262400-13262800	Weak transcription	Fetal Heart	heart
49	chr18:13262400-13263000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr18:13262400-13263000	Weak transcription	Spleen	Spleen

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