Variant report

Variant	rs62108261
Chromosome Location	chr19:38098789-38098790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62110432	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62111487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38086600-38098800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr19:38086600-38099400	Weak transcription	Fetal Stomach	stomach
3	chr19:38086600-38103200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr19:38087200-38099400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr19:38087200-38100200	Weak transcription	Right Ventricle	heart
6	chr19:38087200-38103000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:38087800-38107400	ZNF genes & repeats	Liver	Liver
8	chr19:38089200-38107200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr19:38090400-38105200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
10	chr19:38090600-38105400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:38091200-38101000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:38092200-38103400	Weak transcription	Thymus	Thymus
13	chr19:38092400-38102400	Weak transcription	Dnd41	blood
14	chr19:38093400-38100200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr19:38093600-38102800	Weak transcription	Fetal Brain Female	brain
16	chr19:38093600-38105000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr19:38093800-38099600	Weak transcription	Pancreas	Pancrea
18	chr19:38093800-38101000	Weak transcription	Psoas Muscle	Psoas
19	chr19:38094200-38098800	Weak transcription	Aorta	Aorta
20	chr19:38094200-38098800	Weak transcription	Lung	lung
21	chr19:38094600-38102600	Weak transcription	Fetal Brain Male	brain
22	chr19:38094600-38103200	Weak transcription	Brain Germinal Matrix	brain
23	chr19:38095400-38099800	Strong transcription	Left Ventricle	heart
24	chr19:38095400-38107200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr19:38095600-38100000	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr19:38095600-38100000	ZNF genes & repeats	Colon Smooth Muscle	Colon
27	chr19:38095600-38105000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
28	chr19:38095600-38105400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr19:38095800-38098800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:38095800-38101000	Weak transcription	Fetal Kidney	kidney
31	chr19:38096000-38099600	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr19:38096600-38100400	ZNF genes & repeats	Ovary	ovary
33	chr19:38096800-38099800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
34	chr19:38096800-38099800	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr19:38096800-38105400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
36	chr19:38097000-38099800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
37	chr19:38097200-38099200	Strong transcription	Brain Hippocampus Middle	brain
38	chr19:38097200-38100000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
39	chr19:38097400-38102600	Strong transcription	Brain Angular Gyrus	brain
40	chr19:38097400-38102600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr19:38097600-38098800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr19:38097600-38098800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr19:38097600-38099000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr19:38097600-38100800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr19:38098200-38099000	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr19:38098200-38099200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:38098200-38107200	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr19:38098400-38099800	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr19:38098400-38100000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr19:38098400-38100200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links