Variant report

Variant	rs62108302
Chromosome Location	chr19:38172869-38172870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10424047	0.81[ASN][1000 genomes]
rs11879149	0.90[ASN][1000 genomes]
rs11880604	0.90[ASN][1000 genomes]
rs34743484	0.81[ASN][1000 genomes]
rs3810359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56281742	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57504517	0.81[ASN][1000 genomes]
rs60686304	0.90[ASN][1000 genomes]
rs62108262	0.90[ASN][1000 genomes]
rs62108264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62108289	0.90[ASN][1000 genomes]
rs62108290	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62108292	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62108293	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62108297	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62108350	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62110193	0.81[EUR][1000 genomes]
rs7245981	0.83[ASN][1000 genomes]
rs7247175	0.85[ASN][1000 genomes]
rs73932929	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8102189	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8104747	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8108261	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38166600-38182600	Weak transcription	Right Ventricle	heart
2	chr19:38166800-38180000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:38169800-38182200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr19:38170400-38173600	Weak transcription	Fetal Lung	lung
5	chr19:38170400-38176600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr19:38170400-38177000	Weak transcription	Brain Anterior Caudate	brain
7	chr19:38170400-38177200	Weak transcription	Psoas Muscle	Psoas
8	chr19:38170400-38182200	Weak transcription	Brain Substantia Nigra	brain
9	chr19:38170600-38182200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:38170800-38182200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:38171400-38173400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr19:38171400-38173600	Weak transcription	Brain Hippocampus Middle	brain
13	chr19:38171400-38182200	Weak transcription	Brain Angular Gyrus	brain
14	chr19:38172000-38175400	ZNF genes & repeats	Fetal Brain Female	brain
15	chr19:38172200-38173600	Weak transcription	Ovary	ovary
16	chr19:38172200-38176400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr19:38172600-38173600	Weak transcription	Fetal Stomach	stomach
18	chr19:38172800-38173600	Weak transcription	Dnd41	blood
19	chr19:38172800-38177000	Weak transcription	Brain Germinal Matrix	brain
20	chr19:38172800-38182200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links