Variant report

Variant rs62109732
Chromosome Location chr2:20423604-20423605
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20416000-20423800 Transcr. at gene 5' and 3' NHEK skin
2 chr2:20421600-20423800 Flanking Active TSS GM12878-XiMat blood
3 chr2:20421800-20424400 Enhancers Fetal Brain Male brain
4 chr2:20422000-20425200 Active TSS Esophagus oesophagus
5 chr2:20422200-20425200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr2:20422400-20423800 Flanking Bivalent TSS/Enh H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr2:20422600-20424000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
8 chr2:20422600-20424200 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin02 Skin
9 chr2:20422600-20425600 Active TSS Fetal Brain Female brain
10 chr2:20422600-20425800 Active TSS Rectal Smooth Muscle rectum
11 chr2:20422800-20423800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
12 chr2:20422800-20423800 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
13 chr2:20422800-20423800 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
14 chr2:20422800-20424600 Flanking Active TSS Cortex derived primary cultured neurospheres brain
15 chr2:20422800-20424800 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr2:20422800-20425400 Active TSS Brain Angular Gyrus brain
17 chr2:20422800-20425400 Active TSS A549 lung
18 chr2:20422800-20425400 Active TSS HMEC breast
19 chr2:20422800-20425600 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr2:20422800-20425600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr2:20422800-20425600 Active TSS Breast Myoepithelial Primary Cells Breast
22 chr2:20422800-20426000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr2:20423000-20423800 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr2:20423000-20423800 Bivalent/Poised TSS Brain Cingulate Gyrus brain
25 chr2:20423000-20423800 Active TSS Fetal Kidney kidney
26 chr2:20423000-20423800 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
27 chr2:20423000-20423800 Bivalent/Poised TSS Fetal Stomach stomach
28 chr2:20423000-20423800 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
29 chr2:20423000-20424000 Flanking Active TSS Primary B cells from cord blood blood
30 chr2:20423000-20424600 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin03 Skin
31 chr2:20423000-20425000 Bivalent Enhancer Primary T cells fromperipheralblood blood
32 chr2:20423000-20425200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
33 chr2:20423000-20425200 Active TSS Placenta Amnion Placenta Amnion
34 chr2:20423000-20425200 Active TSS Right Ventricle heart
35 chr2:20423000-20425400 Active TSS ES-I3 Cell Line embryonic stem cell
36 chr2:20423000-20425400 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr2:20423000-20425400 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr2:20423000-20425400 Active TSS HUES6 Cell Line embryonic stem cell
39 chr2:20423000-20425400 Active TSS iPS-18 Cell Line embryonic stem cell
40 chr2:20423000-20425400 Active TSS iPS-20b Cell Line embryonic stem cell
41 chr2:20423000-20425400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:20423000-20425400 Bivalent/Poised TSS Brain Hippocampus Middle brain
43 chr2:20423000-20425400 Weak transcription Fetal Heart heart
44 chr2:20423000-20425400 Active TSS Fetal Intestine Small intestine
45 chr2:20423000-20425400 Active TSS Pancreatic Islets Pancreatic Islet
46 chr2:20423000-20425400 Active TSS Fetal Lung lung
47 chr2:20423000-20425400 Active TSS Ovary ovary
48 chr2:20423000-20425400 Active TSS Rectal Mucosa Donor 29 rectum
49 chr2:20423000-20425400 Active TSS NHDF-Ad bronchial
50 chr2:20423000-20425600 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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