Variant report

Variant	rs62109968
Chromosome Location	chr19:36066977-36066978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36066525..36067230-chr2:111654141..111654641,2	MCF-7	breast:
2	chr19:36066543..36068169-chr2:230045521..230047068,2	MCF-7	breast:
3	chr19:36066669..36067222-chr2:230045577..230046094,2	MCF-7	breast:
4	chr19:24183697..24185363-chr19:36065061..36068039,2	MCF-7	breast:
5	chr19:36066562..36067220-chr4:70296617..70297159,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11084824	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11670252	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12610264	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35618526	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62109963	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62109992	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36066400-36067000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:36066400-36067000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr19:36066400-36067000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr19:36066400-36067000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr19:36066400-36067000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr19:36066400-36067000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr19:36066400-36067000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:36066400-36067000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr19:36066400-36067000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
10	chr19:36066400-36067000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr19:36066400-36067000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
12	chr19:36066400-36067000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr19:36066400-36067000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr19:36066400-36067000	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr19:36066400-36067000	ZNF genes & repeats	Liver	Liver
16	chr19:36066400-36067000	ZNF genes & repeats	Colonic Mucosa	Colon
17	chr19:36066400-36067000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
18	chr19:36066400-36067000	ZNF genes & repeats	Esophagus	oesophagus
19	chr19:36066400-36067000	ZNF genes & repeats	Fetal Intestine Large	intestine
20	chr19:36066400-36067000	Flanking Bivalent TSS/Enh	Gastric	stomach
21	chr19:36066400-36067000	ZNF genes & repeats	Lung	lung
22	chr19:36066400-36067000	ZNF genes & repeats	Pancreas	Pancrea
23	chr19:36066400-36067000	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
24	chr19:36066400-36067000	ZNF genes & repeats	Thymus	Thymus
25	chr19:36066400-36067000	ZNF genes & repeats	Spleen	Spleen
26	chr19:36066400-36067000	ZNF genes & repeats	Dnd41	blood
27	chr19:36066400-36067000	ZNF genes & repeats	HSMMtube	muscle
28	chr19:36066400-36067000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr19:36066400-36067200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:36066400-36067200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr19:36066400-36067200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr19:36066400-36067200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr19:36066400-36067400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
34	chr19:36066400-36067400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
35	chr19:36066400-36067400	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr19:36066800-36067000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
37	chr19:36066800-36067000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
38	chr19:36066800-36067000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
39	chr19:36066800-36067000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
40	chr19:36066800-36067000	Bivalent/Poised TSS	Fetal Heart	heart
41	chr19:36066800-36067000	Bivalent Enhancer	Placenta	Placenta
42	chr19:36066800-36067000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
43	chr19:36066800-36067000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
44	chr19:36066800-36067000	Bivalent/Poised TSS	Hela-S3	cervix
45	chr19:36066800-36067800	Weak transcription	Right Atrium	heart

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