Variant report

Variant	rs62110396
Chromosome Location	chr19:37927895-37927896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs62108299	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62109190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62109241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62110078	1.00[AFR][1000 genomes]
rs62110437	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62111491	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
2	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
4	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:37911200-37936600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr19:37911200-37936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:37923000-37929000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr19:37923200-37929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:37923400-37929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr19:37923400-37929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:37924400-37932800	Weak transcription	Osteobl	bone
14	chr19:37924800-37929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr19:37925000-37930400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr19:37925000-37943400	Weak transcription	HSMM	muscle
17	chr19:37925200-37929000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr19:37925400-37931800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:37925600-37929200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:37925800-37928800	Weak transcription	Ovary	ovary
21	chr19:37926000-37928000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr19:37926000-37928800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr19:37926000-37928800	Weak transcription	Fetal Stomach	stomach
24	chr19:37926000-37929000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr19:37926000-37929000	Weak transcription	Gastric	stomach
26	chr19:37926000-37929000	Weak transcription	Left Ventricle	heart
27	chr19:37926000-37929000	Weak transcription	Lung	lung
28	chr19:37926000-37929000	Weak transcription	Pancreas	Pancrea
29	chr19:37926000-37929000	Weak transcription	Thymus	Thymus
30	chr19:37926000-37929000	Weak transcription	Spleen	Spleen
31	chr19:37926400-37929000	Weak transcription	Aorta	Aorta
32	chr19:37927000-37928000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:37927000-37928200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr19:37927000-37930200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:37927000-37930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr19:37927600-37936600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr19:37927800-37928200	ZNF genes & repeats	Colon Smooth Muscle	Colon
38	chr19:37927800-37936200	ZNF genes & repeats	Dnd41	blood
39	chr19:37927800-37936400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:37927800-37936600	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr19:37927800-37937200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links