Variant report

Variant	rs62112215
Chromosome Location	chr2:20325613-20325614
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20324820..20327115-chr2:20423339..20425501,3	MCF-7	breast:
2	chr2:20322072..20326084-chr2:20334448..20336577,3	MCF-7	breast:
3	chr2:20324363..20326500-chr2:20327352..20329382,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RHOB-13	chr2:20325559-20325787	NONHSAT069427

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11675411	1.00[ASN][1000 genomes]
rs11689937	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7563647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7564778	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009521	chr2:20310479-20388959	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20320400-20326400	Enhancers	Placenta	Placenta
2	chr2:20322000-20327600	Weak transcription	Fetal Intestine Small	intestine
3	chr2:20322600-20327600	Weak transcription	Liver	Liver
4	chr2:20323000-20329800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:20324600-20326400	Enhancers	Esophagus	oesophagus
6	chr2:20324600-20326800	Enhancers	Pancreas	Pancrea
7	chr2:20324800-20326200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:20324800-20326400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:20324800-20326600	Enhancers	NHEK	skin
10	chr2:20324800-20326800	Enhancers	Duodenum Mucosa	Duodenum
11	chr2:20325000-20325800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:20325000-20325800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:20325000-20326000	Weak transcription	Left Ventricle	heart
14	chr2:20325000-20326400	Enhancers	Lung	lung
15	chr2:20325000-20326800	Enhancers	Adipose Nuclei	Adipose
16	chr2:20325000-20326800	Enhancers	Stomach Mucosa	stomach
17	chr2:20325200-20325800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:20325400-20325800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:20325400-20326200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:20325400-20326200	Enhancers	Hela-S3	cervix
21	chr2:20325600-20325800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:20325600-20326600	Enhancers	Small Intestine	intestine

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