Variant report
| Variant | rs62113179 |
|---|---|
| Chromosome Location | chr19:51353230-51353231 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KLK3 | TF binding region |
| ENSG00000268375 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10402571 | 0.96[EUR][1000 genomes] |
| rs17632611 | 1.00[ASN][1000 genomes] |
| rs55781558 | 0.96[EUR][1000 genomes] |
| rs62113072 | 0.91[ASN][1000 genomes] |
| rs62113073 | 0.91[ASN][1000 genomes] |
| rs62113074 | 0.91[ASN][1000 genomes] |
| rs62113175 | 0.88[EUR][1000 genomes] |
| rs62113213 | 1.00[ASN][1000 genomes] |
| rs62113227 | 0.91[ASN][1000 genomes] |
| rs7256136 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060760 | chr19:50883425-51463712 | ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 99 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058177 | chr19:50984774-51463712 | Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| 3 | nsv2531 | chr19:51333628-51378597 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:51351800-51354800 | Weak transcription | Spleen | Spleen |
