Variant report

Variant	rs62115695
Chromosome Location	chr12:9782477-9782478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17687371	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2111527	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2160749	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2193520	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2335650	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36147087	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4427942	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4638721	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55786521	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56064466	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56254459	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56297400	1.00[AFR][1000 genomes]
rs62114076	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62114077	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62114083	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62114084	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62114089	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62114092	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62114095	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62114109	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62114110	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62114118	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62114119	0.80[AMR][1000 genomes]
rs62114120	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62114121	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62114851	1.00[AFR][1000 genomes]
rs62115697	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62115701	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62115703	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62115704	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62115708	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73021446	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
4	esv1821732	chr12:9560087-9830668	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv1823760	chr12:9560087-9830668	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv428271	chr12:9560087-9830668	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv2757489	chr12:9583455-9810764	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv917178	chr12:9637315-9820153	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9770200-9786600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:9771600-9794200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:9771600-9799200	Weak transcription	Fetal Lung	lung
4	chr12:9778000-9785200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:9778000-9785400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:9778200-9785200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:9778200-9785400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:9778200-9787400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:9779800-9784600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:9779800-9785000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr12:9779800-9785000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:9782400-9787200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links