Variant report

Variant	rs62115866
Chromosome Location	chr5:147326437-147326438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10402458	0.84[ASN][1000 genomes]
rs10410632	0.84[AMR][1000 genomes]
rs10423013	0.84[ASN][1000 genomes]
rs11083696	0.82[ASN][1000 genomes]
rs11083697	0.93[ASN][1000 genomes]
rs11083698	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11665945	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11668302	0.82[EUR][1000 genomes]
rs12461209	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12463305	0.91[ASN][1000 genomes]
rs2074924	0.85[EUR][1000 genomes]
rs2883683	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34585267	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3950956	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4028435	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56778279	0.84[EUR][1000 genomes]
rs58027867	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59376844	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62115871	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62115872	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62115876	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62115904	0.82[EUR][1000 genomes]
rs8105835	0.81[ASN][1000 genomes]
rs8105933	0.94[ASN][1000 genomes]
rs8106057	0.93[ASN][1000 genomes]
rs8107592	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv16820	chr5:147320290-147337996	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147326200-147326600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:147326200-147326600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:147326200-147326600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:147326200-147326600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:147326200-147326800	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr5:147326200-147326800	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr5:147326200-147326800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:147326200-147326800	Active TSS	Placenta	Placenta
9	chr5:147326200-147327000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:147326200-147327200	Active TSS	H9 Cell Line	embryonic stem cell
11	chr5:147326200-147327200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:147326200-147327200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:147326200-147327200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:147326200-147327400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr5:147326200-147327400	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr5:147326200-147327600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr5:147326200-147327600	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr5:147326200-147327600	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr5:147326200-147328400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:147326200-147328400	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr5:147326400-147327200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:147326400-147327200	Active TSS	K562	blood
23	chr5:147326400-147327400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:147326400-147327600	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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