Variant report

Variant	rs62116361
Chromosome Location	chr19:51963363-51963364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55731985	1.00[ASN][1000 genomes]
rs62115064	1.00[ASN][1000 genomes]
rs62115067	1.00[ASN][1000 genomes]
rs62115081	1.00[ASN][1000 genomes]
rs62116166	1.00[ASN][1000 genomes]
rs62116174	1.00[ASN][1000 genomes]
rs62116364	1.00[ASN][1000 genomes]
rs62116365	1.00[ASN][1000 genomes]
rs62116366	1.00[ASN][1000 genomes]
rs62116367	1.00[ASN][1000 genomes]
rs62116368	1.00[ASN][1000 genomes]
rs73067310	1.00[ASN][1000 genomes]
rs73067312	1.00[ASN][1000 genomes]
rs73067320	1.00[ASN][1000 genomes]
rs73067322	1.00[ASN][1000 genomes]
rs73067324	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv458724	chr19:51925519-51975723	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv579965	chr19:51925519-51975723	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv544051	chr19:51944903-52147459	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51957400-51964200	Weak transcription	Right Atrium	heart
2	chr19:51958200-51964000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:51960000-51963800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr19:51960800-51963400	Weak transcription	Fetal Muscle Leg	muscle
5	chr19:51960800-51963800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr19:51961600-51963400	Weak transcription	Brain Hippocampus Middle	brain
7	chr19:51961600-51963600	Weak transcription	Brain Anterior Caudate	brain
8	chr19:51962000-51963600	Enhancers	Primary hematopoietic stem cells	blood
9	chr19:51962000-51963600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:51962200-51963600	Weak transcription	Brain Substantia Nigra	brain
11	chr19:51962400-51963400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr19:51962400-51963600	Weak transcription	Placenta	Placenta
13	chr19:51962400-51963800	Weak transcription	Spleen	Spleen
14	chr19:51962600-51963800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr19:51963200-51963400	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr19:51963200-51963800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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