Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44296554..44298523-chr19:44304318..44306935,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159871	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10413172	0.84[EUR][1000 genomes]
rs10422108	0.84[EUR][1000 genomes]
rs11083724	0.85[EUR][1000 genomes]
rs11666403	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11670159	0.84[EUR][1000 genomes]
rs11673490	0.84[EUR][1000 genomes]
rs11879355	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12611069	0.83[EUR][1000 genomes]
rs12611428	0.84[EUR][1000 genomes]
rs1386502	0.84[EUR][1000 genomes]
rs1685192	0.83[EUR][1000 genomes]
rs3786956	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62114559	0.83[EUR][1000 genomes]
rs62116993	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62116994	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62116995	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62116996	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62116997	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62116998	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67648499	0.84[EUR][1000 genomes]
rs67704568	0.84[EUR][1000 genomes]
rs8104300	0.84[EUR][1000 genomes]
rs8109478	0.85[EUR][1000 genomes]
rs8109812	0.85[EUR][1000 genomes]
rs8112656	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44289400-44302600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:44289800-44300800	Weak transcription	Placenta	Placenta
3	chr19:44290000-44302400	Weak transcription	NHEK	skin
4	chr19:44290200-44302200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr19:44297400-44298400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:44297400-44298400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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