Variant report

Variant	rs62118292
Chromosome Location	chr2:11677998-11677999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10861240..10863397-chr2:11676243..11678247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143882	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv873663	chr2:11664349-11783775	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3439617	chr2:11677926-11680474	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11665000-11678000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:11669400-11678000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:11671200-11679600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:11671400-11679200	Weak transcription	Right Atrium	heart
5	chr2:11672400-11678200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:11672400-11679400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:11672400-11679800	Enhancers	Pancreas	Pancrea
8	chr2:11672800-11679400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:11673000-11679600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:11673600-11679400	Weak transcription	Brain Angular Gyrus	brain
11	chr2:11673600-11679400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:11673600-11679400	Enhancers	Ovary	ovary
13	chr2:11674000-11679400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:11674400-11679200	Weak transcription	Liver	Liver
15	chr2:11674400-11679200	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:11674600-11679600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:11675000-11678000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:11675400-11678000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr2:11675400-11678000	Weak transcription	Right Ventricle	heart
20	chr2:11675400-11679600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:11675400-11679600	Weak transcription	Fetal Heart	heart
22	chr2:11676400-11678000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:11676400-11679200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:11676400-11679200	Weak transcription	Left Ventricle	heart
25	chr2:11676400-11679400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr2:11676400-11679600	Weak transcription	Psoas Muscle	Psoas
27	chr2:11676400-11681800	Weak transcription	Gastric	stomach
28	chr2:11676600-11678000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:11676600-11678000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:11676800-11678200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr2:11676800-11678200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:11676800-11679400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr2:11677200-11678000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr2:11677600-11679200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr2:11677800-11678400	Genic enhancers	HepG2	liver

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