Variant report

Variant	rs62119390
Chromosome Location	chr2:9711748-9711749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9696163..9698048-chr2:9711205..9712932,2	MCF-7	breast:
2	chr2:9694306..9696780-chr2:9709279..9711917,3	K562	blood:
3	chr2:9696272..9698807-chr2:9711128..9713939,2	K562	blood:

Variant related genes	Relation type
ENSG00000271855	Chromatin interaction
ENSG00000151694	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11888902	0.86[EUR][1000 genomes]
rs11902431	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12465158	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470619	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476008	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16867062	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16867073	0.90[EUR][1000 genomes]
rs16867074	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41308184	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669401	0.90[EUR][1000 genomes]
rs62119425	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62119430	0.90[EUR][1000 genomes]
rs6715408	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7597961	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9696800-9719800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:9696800-9767600	Weak transcription	Gastric	stomach
3	chr2:9697000-9720000	Weak transcription	Fetal Stomach	stomach
4	chr2:9697200-9719800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:9697200-9723800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:9697400-9714200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:9697400-9725000	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:9697400-9729800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:9697600-9714000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:9697800-9714000	Weak transcription	HepG2	liver
11	chr2:9697800-9723600	Weak transcription	Primary B cells from cord blood	blood
12	chr2:9698000-9720000	Weak transcription	Fetal Brain Female	brain
13	chr2:9699400-9713000	Weak transcription	Left Ventricle	heart
14	chr2:9699600-9713200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:9699600-9725600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:9701000-9720400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:9704600-9719000	Weak transcription	Liver	Liver
18	chr2:9705400-9723600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:9705400-9723600	Weak transcription	Colonic Mucosa	Colon
20	chr2:9706000-9714200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr2:9706000-9722800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:9706000-9722800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:9706000-9733600	Weak transcription	Pancreas	Pancrea
24	chr2:9706200-9713000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:9706200-9713000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:9706200-9713000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:9706200-9713000	Weak transcription	A549	lung
28	chr2:9706200-9713000	Weak transcription	HSMM	muscle
29	chr2:9706200-9713000	Weak transcription	NHLF	lung
30	chr2:9706200-9713200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:9706200-9713200	Weak transcription	NH-A	brain
32	chr2:9706200-9713200	Weak transcription	NHDF-Ad	bronchial
33	chr2:9706200-9713400	Weak transcription	NHEK	skin
34	chr2:9706200-9713600	Weak transcription	Adipose Nuclei	Adipose
35	chr2:9706200-9713600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr2:9706200-9714000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr2:9706200-9720200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:9706200-9722800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:9706200-9727800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:9706200-9728000	Weak transcription	Psoas Muscle	Psoas
41	chr2:9706400-9720200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:9706400-9723600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:9706400-9725000	Weak transcription	Colon Smooth Muscle	Colon
44	chr2:9706400-9734200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:9710800-9712800	Weak transcription	K562	blood
46	chr2:9710800-9723800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr2:9711000-9712800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:9711000-9714000	Weak transcription	Ovary	ovary
49	chr2:9711000-9719000	Weak transcription	Right Atrium	heart
50	chr2:9711200-9713000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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