Variant report

Variant	rs62124614
Chromosome Location	chr2:20586920-20586921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10514649	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55853919	0.87[AMR][1000 genomes]
rs56406039	0.92[ASN][1000 genomes]
rs62124615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62124616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20581600-20587400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:20581600-20601000	Weak transcription	Right Atrium	heart
3	chr2:20583400-20587200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:20583600-20587200	Weak transcription	NHEK	skin
5	chr2:20585400-20587200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:20585800-20587200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:20585800-20593800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:20586400-20587400	Enhancers	Osteobl	bone
9	chr2:20586600-20587600	Weak transcription	Colonic Mucosa	Colon
10	chr2:20586600-20587600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:20586600-20589800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:20586600-20592000	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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