Variant report

Variant	rs62133077
Chromosome Location	chr2:37225646-37225647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1007823	0.98[ASN][1000 genomes]
rs10495869	0.89[ASN][1000 genomes]
rs1123648	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11674811	0.88[ASN][1000 genomes]
rs11682782	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11684340	0.82[EUR][1000 genomes]
rs11685402	0.83[ASN][1000 genomes]
rs11688446	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11694342	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11895180	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13420311	0.85[ASN][1000 genomes]
rs17020125	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17020136	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17020143	0.88[ASN][1000 genomes]
rs17038861	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2160411	0.92[ASN][1000 genomes]
rs2372788	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770770	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3796041	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4670642	0.82[EUR][1000 genomes]
rs4670645	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4670649	0.85[ASN][1000 genomes]
rs59952755	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60572996	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61380056	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61689754	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62133071	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62133080	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62133081	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62133082	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62133104	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62133105	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62133107	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62133108	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62133110	0.83[ASN][1000 genomes]
rs6544050	0.91[ASN][1000 genomes]
rs6709006	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6712162	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6723869	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6728062	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6753260	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9636389	0.90[ASN][1000 genomes]
rs9636428	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9636429	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv456363	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv581470	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv581471	chr2:37213186-37257386	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37194400-37229000	Weak transcription	Gastric	stomach
2	chr2:37194800-37226400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:37194800-37232400	Weak transcription	NHLF	lung
4	chr2:37195200-37252800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:37195400-37227400	Weak transcription	A549	lung
6	chr2:37195400-37227600	Weak transcription	HUVEC	blood vessel
7	chr2:37195400-37248600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:37195600-37231400	Weak transcription	Brain Angular Gyrus	brain
9	chr2:37195800-37229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:37196200-37226400	Weak transcription	Dnd41	blood
11	chr2:37202000-37228800	Weak transcription	Spleen	Spleen
12	chr2:37202800-37228800	Weak transcription	Aorta	Aorta
13	chr2:37203600-37231600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:37204200-37227600	Weak transcription	HepG2	liver
15	chr2:37204400-37228800	Weak transcription	Esophagus	oesophagus
16	chr2:37205200-37229400	Weak transcription	Brain Substantia Nigra	brain
17	chr2:37206800-37227400	Weak transcription	NHEK	skin
18	chr2:37208600-37226400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:37208800-37227600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:37209000-37228600	Weak transcription	Psoas Muscle	Psoas
21	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
22	chr2:37210200-37227600	Weak transcription	Fetal Heart	heart
23	chr2:37211400-37238200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr2:37212400-37229000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr2:37212800-37232000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:37213200-37227400	Weak transcription	Hela-S3	cervix
27	chr2:37214200-37248400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr2:37214400-37226200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:37214600-37229000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:37214600-37229200	Weak transcription	HSMMtube	muscle
31	chr2:37215200-37226400	Weak transcription	Colon Smooth Muscle	Colon
32	chr2:37215200-37231000	Weak transcription	HMEC	breast
33	chr2:37215400-37227600	Weak transcription	Stomach Mucosa	stomach
34	chr2:37215600-37226000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr2:37215800-37226000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr2:37215800-37226200	Weak transcription	Thymus	Thymus
37	chr2:37216000-37226200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:37216000-37227400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:37216000-37228800	Weak transcription	Right Ventricle	heart
40	chr2:37216000-37229000	Weak transcription	Brain Anterior Caudate	brain
41	chr2:37216000-37239800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr2:37216200-37231400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:37216600-37228400	Weak transcription	Fetal Brain Male	brain
44	chr2:37217000-37229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr2:37217400-37226200	Weak transcription	Brain Germinal Matrix	brain
46	chr2:37218000-37226200	Weak transcription	Fetal Brain Female	brain
47	chr2:37218000-37227400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr2:37218200-37227600	Weak transcription	NHDF-Ad	bronchial
49	chr2:37219200-37256400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr2:37220000-37239600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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